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| <StructureSection load='6jqa' size='340' side='right'caption='[[6jqa]], [[Resolution|resolution]] 2.40Å' scene=''> | | <StructureSection load='6jqa' size='340' side='right'caption='[[6jqa]], [[Resolution|resolution]] 2.40Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6jqa]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Onion_yellows_phytoplasma_oy-w Onion yellows phytoplasma oy-w]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JQA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JQA FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6jqa]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Onion_yellows_phytoplasma_OY-W Onion yellows phytoplasma OY-W]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JQA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JQA FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.402Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=IYR:3-IODO-TYROSINE'>IYR</scene>, <scene name='pdbligand=TYI:3,5-DIIODOTYROSINE'>TYI</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=IYR:3-IODO-TYROSINE'>IYR</scene>, <scene name='pdbligand=TYI:3,5-DIIODOTYROSINE'>TYI</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PHYL1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=428984 Onion yellows phytoplasma OY-W])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jqa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jqa OCA], [https://pdbe.org/6jqa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jqa RCSB], [https://www.ebi.ac.uk/pdbsum/6jqa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jqa ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jqa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jqa OCA], [http://pdbe.org/6jqa PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jqa RCSB], [http://www.ebi.ac.uk/pdbsum/6jqa PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jqa ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/X5IFG3_ONYPH X5IFG3_ONYPH] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Onion yellows phytoplasma oy-w]] | + | [[Category: Onion yellows phytoplasma OY-W]] |
- | [[Category: Maejima, K]] | + | [[Category: Maejima K]] |
- | [[Category: Miyatake, H]] | + | [[Category: Miyatake H]] |
- | [[Category: Mads-domain transcription factor]]
| + | |
- | [[Category: Phyl1]]
| + | |
- | [[Category: Phyllody]]
| + | |
- | [[Category: Phyllogen]]
| + | |
- | [[Category: Phytoplasma]]
| + | |
- | [[Category: Transcription]]
| + | |
| Structural highlights
Function
X5IFG3_ONYPH
Publication Abstract from PubMed
Phytoplasmas are plant pathogenic bacteria that often induce unique phyllody symptoms in which the floral organs are transformed into leaf-like structures. Recently, a novel family of bacterial effector genes, called phyllody-inducing genes (phyllogens), was identified as being involved in the induction of phyllody by degrading floral MADS-domain transcription factors (MTFs). However, the structural characteristics of phyllogens are unknown. In this study, we elucidated the crystal structure of PHYL1OY, a phyllogen of 'Candidatus Phytoplasma asteris' onion yellows strain, at a resolution of 2.4 A. The structure of PHYL1 consisted of two alpha-helices connected by a random loop in a coiled-coil manner. In both alpha-helices, the distributions of hydrophobic residues were conserved among phyllogens. Amino acid insertion mutations into either alpha-helix resulted in the loss of phyllody-inducing activity and the ability of the phyllogen to degrade floral MTF. In contrast, the same insertion in the loop region did not affect either activity, indicating that both conserved alpha-helices are important for the function of phyllogens. This is the first report on the crystal structure of an effector protein of phytoplasmas.
Crystal structure of phyllogen, a phyllody-inducing effector protein of phytoplasma.,Iwabuchi N, Maejima K, Kitazawa Y, Miyatake H, Nishikawa M, Tokuda R, Koinuma H, Miyazaki A, Nijo T, Oshima K, Yamaji Y, Namba S Biochem Biophys Res Commun. 2019 Jun 11;513(4):952-957. doi:, 10.1016/j.bbrc.2019.04.060. Epub 2019 Apr 19. PMID:31010685[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Iwabuchi N, Maejima K, Kitazawa Y, Miyatake H, Nishikawa M, Tokuda R, Koinuma H, Miyazaki A, Nijo T, Oshima K, Yamaji Y, Namba S. Crystal structure of phyllogen, a phyllody-inducing effector protein of phytoplasma. Biochem Biophys Res Commun. 2019 Jun 11;513(4):952-957. doi:, 10.1016/j.bbrc.2019.04.060. Epub 2019 Apr 19. PMID:31010685 doi:http://dx.doi.org/10.1016/j.bbrc.2019.04.060
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