This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6abk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:23, 22 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6abk' size='340' side='right'caption='[[6abk]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
<StructureSection load='6abk' size='340' side='right'caption='[[6abk]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6abk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_mazei_jcm_9314 Methanosarcina mazei jcm 9314]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ABK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ABK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6abk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanosarcina_mazei_JCM_9314 Methanosarcina mazei JCM 9314]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ABK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ABK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=9VF:(2S)-2-azanyl-6-(trimethylsilylmethoxycarbonylamino)hexanoic+acid'>9VF</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.58&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6aac|6aac]], [[6aad|6aad]], [[6aan|6aan]], [[6aao|6aao]], [[6aap|6aap]], [[6aaq|6aaq]], [[6aaz|6aaz]], [[6ab0|6ab0]], [[6ab1|6ab1]], [[6ab2|6ab2]], [[6ab8|6ab8]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=9VF:(2S)-2-azanyl-6-(trimethylsilylmethoxycarbonylamino)hexanoic+acid'>9VF</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pylS, DU43_20175, DU67_18120 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1293038 Methanosarcina mazei JCM 9314])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6abk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6abk OCA], [https://pdbe.org/6abk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6abk RCSB], [https://www.ebi.ac.uk/pdbsum/6abk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6abk ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pyrrolysine--tRNA(Pyl)_ligase Pyrrolysine--tRNA(Pyl) ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.26 6.1.1.26] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6abk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6abk OCA], [http://pdbe.org/6abk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6abk RCSB], [http://www.ebi.ac.uk/pdbsum/6abk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6abk ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/A0A0F8JXW8_METMZ A0A0F8JXW8_METMZ]] Catalyzes the attachment of pyrrolysine to tRNA(Pyl). Pyrrolysine is a lysine derivative encoded by the termination codon UAG.[HAMAP-Rule:MF_01573]
+
[https://www.uniprot.org/uniprot/PYLS_METMA PYLS_METMA] Catalyzes the attachment of pyrrolysine to tRNA(Pyl). Pyrrolysine is a lysine derivative encoded by the termination codon UAG (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 19:
</div>
</div>
<div class="pdbe-citations 6abk" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6abk" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 26: Line 27:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Methanosarcina mazei jcm 9314]]
+
[[Category: Methanosarcina mazei JCM 9314]]
-
[[Category: Kuratani, M]]
+
[[Category: Kuratani M]]
-
[[Category: Yanagisawa, T]]
+
[[Category: Yanagisawa T]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yokoyama S]]
-
[[Category: Aminoacyl-trna synthetase]]
+
-
[[Category: Non-natural amino acid]]
+
-
[[Category: Pyrrolysyl-trna synthetase]]
+
-
[[Category: Translation]]
+
-
[[Category: Trna]]
+

Current revision

Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with TeocLys

PDB ID 6abk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6abk"
Personal tools