|
|
Line 3: |
Line 3: |
| <StructureSection load='4ux7' size='340' side='right'caption='[[4ux7]], [[Resolution|resolution]] 2.55Å' scene=''> | | <StructureSection load='4ux7' size='340' side='right'caption='[[4ux7]], [[Resolution|resolution]] 2.55Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4ux7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridioides_difficile_630 Clostridioides difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UX7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UX7 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4ux7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_630 Clostridioides difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UX7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UX7 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sortase_B Sortase B], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.71 3.4.22.71] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ux7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ux7 OCA], [https://pdbe.org/4ux7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ux7 RCSB], [https://www.ebi.ac.uk/pdbsum/4ux7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ux7 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ux7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ux7 OCA], [http://pdbe.org/4ux7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ux7 RCSB], [http://www.ebi.ac.uk/pdbsum/4ux7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ux7 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q183F3_CLOD6 Q183F3_CLOD6] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 23: |
Line 24: |
| [[Category: Clostridioides difficile 630]] | | [[Category: Clostridioides difficile 630]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Sortase B]]
| + | [[Category: Acharya KR]] |
- | [[Category: Acharya, K R]] | + | [[Category: Chambers CJ]] |
- | [[Category: Chambers, C J]] | + | [[Category: Roberts AK]] |
- | [[Category: Roberts, A K]] | + | [[Category: Shone CC]] |
- | [[Category: Shone, C C]] | + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Sortase]]
| + | |
| Structural highlights
Function
Q183F3_CLOD6
Publication Abstract from PubMed
Sortase enzymes are responsible for covalent anchoring of specific proteins to the peptidoglycan of the cell wall of gram-positive bacteria. In some gram-positive bacteria (e.g. Staphylococcus aureus), sortases have been found to be essential for pathogenesis and their inhibitors are under development as potential novel therapeutics. Here we provide the first report on the structural characterisation of the C. difficile sortase. An active site mutant was crystallised and its structure determined to 2.55 A by X-ray diffraction to provide structural insight into its catalytic mechanism. In order to elucidate the role of the sortase in the cell wall biogenesis, a C. difficile sortase knockout strain was constructed by intron mutagenesis. Characterisation of this mutant led to the discovery that the putative adhesin CD0386 is anchored to the peptidoglycan of C. difficile by the sortase SrtB and that an SPKTG peptide motif is involved in the transpeptidation reaction with the C. difficile peptidoglycan. In an animal model for C. difficile infection, the SrtB mutant caused disease at a similar rate of onset as the wild type strain. In conclusion, our detailed study shows that the SrtB enzyme from C. difficile does not play an essential role in pathogenesis.
Structure and function of a Clostridium difficile sortase enzyme.,Chambers CJ, Roberts AK, Shone CC, Acharya KR Sci Rep. 2015 Mar 24;5:9449. doi: 10.1038/srep09449. PMID:25801974[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Chambers CJ, Roberts AK, Shone CC, Acharya KR. Structure and function of a Clostridium difficile sortase enzyme. Sci Rep. 2015 Mar 24;5:9449. doi: 10.1038/srep09449. PMID:25801974 doi:http://dx.doi.org/10.1038/srep09449
|