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| | <StructureSection load='4wqq' size='340' side='right'caption='[[4wqq]], [[Resolution|resolution]] 1.70Å' scene=''> | | <StructureSection load='4wqq' size='340' side='right'caption='[[4wqq]], [[Resolution|resolution]] 1.70Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4wqq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cucec Cucec]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WQQ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4wqq]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Cucumaria_echinata Cucumaria echinata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WQQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WQQ FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4wqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wqq OCA], [http://pdbe.org/4wqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4wqq RCSB], [http://www.ebi.ac.uk/pdbsum/4wqq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4wqq ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4wqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wqq OCA], [https://pdbe.org/4wqq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4wqq RCSB], [https://www.ebi.ac.uk/pdbsum/4wqq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4wqq ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q7M462_CUCEC Q7M462_CUCEC] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Cucec]] | + | [[Category: Cucumaria echinata]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Hatakeyama, T]] | + | [[Category: Hatakeyama T]] |
| - | [[Category: Unno, H]] | + | [[Category: Unno H]] |
| - | [[Category: C-type lectin]]
| + | |
| - | [[Category: Cel-i]]
| + | |
| - | [[Category: Epnh munant]]
| + | |
| - | [[Category: Mannose recognition]]
| + | |
| - | [[Category: Sugar binding protein]]
| + | |
| Structural highlights
Function
Q7M462_CUCEC
Publication Abstract from PubMed
BACKGROUND: CEL-I is a galactose/N-acetylgalactosamine-specific C-type lectin isolated from the sea cucumber Cucumaria echinata. Its carbohydrate-binding site contains a QPD (Gln-Pro-Asp) motif, which is generally recognized as the galactose specificity-determining motif in the C-type lectins. In our previous study, replacement of the QPD motif by an EPN (Glu-Pro-Asn) motif led to a weak binding affinity for mannose. Therefore, we examined the effects of an additional mutation in the carbohydrate-binding site on the specificity of the lectin. METHODS: Trp105 of EPN-CEL-I was replaced by a histidine residue using site-directed mutagenesis, and the binding affinity of the resulting mutant, EPNH-CEL-I, was examined by sugar-polyamidoamine dendrimer assay, isothermal titration calorimetry, and glycoconjugate microarray analysis. Tertiary structure of the EPNH-CEL-I/mannose complex was determined by X-ray crystallographic analysis. RESULTS: Sugar-polyamidoamine dendrimer assay and glycoconjugate microarray analysis revealed a drastic change in the specificity of EPNH-CEL-I from galactose/N-acetylgalactosamine to mannose. The association constant of EPNH-CEL-I for mannose was determined to be 3.17x103M-1 at 25 degrees C. Mannose specificity of EPNH-CEL-I was achieved by stabilization of the binding of mannose in a correct orientation, in which the EPN motif can form proper hydrogen bonds with 3- and 4-hydroxy groups of the bound mannose. CONCLUSIONS: Specificity of CEL-I can be engineered by mutating a limited number of amino acid residues in addition to the QPD/EPN motifs. GENERAL SIGNIFICANCE: Versatility of the C-type carbohydrate-recognition domain structure in the recognition of various carbohydrate chains could become a promising platform to develop novel molecular recognition proteins.
Mannose-recognition mutant of the galactose/N-acetylgalactosamine-specific C-type lectin CEL-I engineered by site-directed mutagenesis.,Moriuchi H, Unno H, Goda S, Tateno H, Hirabayashi J, Hatakeyama T Biochim Biophys Acta. 2015 Apr 11;1850(7):1457-1465. doi:, 10.1016/j.bbagen.2015.04.004. PMID:25869490[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Moriuchi H, Unno H, Goda S, Tateno H, Hirabayashi J, Hatakeyama T. Mannose-recognition mutant of the galactose/N-acetylgalactosamine-specific C-type lectin CEL-I engineered by site-directed mutagenesis. Biochim Biophys Acta. 2015 Apr 11;1850(7):1457-1465. doi:, 10.1016/j.bbagen.2015.04.004. PMID:25869490 doi:http://dx.doi.org/10.1016/j.bbagen.2015.04.004
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