User:Eliška Koutná/Sandbox 3

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The fundamental event in propagation of the infectious form lies in the PrPSc template-directed misfolding of the natural form into the pathogenic, β-sheet-rich version of itself <ref name="pan" />. This process is now widely accepted as a current prion theory, and the most striking fact is that this action lacks any nucleic acid template <ref name="sigurdson" />. However, the replication cycle of PrPSc does need the PRNP gene to direct PrPC synthesis. Also, the interaction between the pathogenic and physiological form must be quite specific to propagate the conversion. The replication process itself can be explained by stochastic fluctuations in the PrPC structure, that would create the intermediate form, PrP*. This partially unfolded monomer can then switch back to the natural conformation, adopt a PrPSc one, or be degraded. Normally, there is an equilibrium between the PrPC and PrP* states which favors the physiological one. Depending on the specific cause of the disease, the PrP* state can adopt a PrPSc conformation either upon contant with a dimer of this infectious form by forming a heteromultimer which is further converted into a homomultimer of PrPSc, or through encounter with another PrP* molecule. <scene name='81/815943/1i4m/1'>This PrP*/PrP* dimer</scene> can then form an infectious dimer and initiate the replication cycle <ref name="cohen&prusiner" /><ref name="cohen">PMID 7909169</ref>. It has been found that certain host-specific RNAs can assist with the conversion into the pathogenic form <ref>DOI 10.1038/nature01979</ref>.
The fundamental event in propagation of the infectious form lies in the PrPSc template-directed misfolding of the natural form into the pathogenic, β-sheet-rich version of itself <ref name="pan" />. This process is now widely accepted as a current prion theory, and the most striking fact is that this action lacks any nucleic acid template <ref name="sigurdson" />. However, the replication cycle of PrPSc does need the PRNP gene to direct PrPC synthesis. Also, the interaction between the pathogenic and physiological form must be quite specific to propagate the conversion. The replication process itself can be explained by stochastic fluctuations in the PrPC structure, that would create the intermediate form, PrP*. This partially unfolded monomer can then switch back to the natural conformation, adopt a PrPSc one, or be degraded. Normally, there is an equilibrium between the PrPC and PrP* states which favors the physiological one. Depending on the specific cause of the disease, the PrP* state can adopt a PrPSc conformation either upon contant with a dimer of this infectious form by forming a heteromultimer which is further converted into a homomultimer of PrPSc, or through encounter with another PrP* molecule. <scene name='81/815943/1i4m/1'>This PrP*/PrP* dimer</scene> can then form an infectious dimer and initiate the replication cycle <ref name="cohen&prusiner" /><ref name="cohen">PMID 7909169</ref>. It has been found that certain host-specific RNAs can assist with the conversion into the pathogenic form <ref>DOI 10.1038/nature01979</ref>.
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A few particular residue changes have been shown to make the native structure more susceptible to the pathogenic conversion: The mutation of Val129 to Met129 has no influence on the electrostatics, however the Met group is much bulkier. Proteins with this mutation crystalized into non-swapped dimers (in contrast to the WT PrPs) and aligned to form intermolecular β-sheets. This mutation has been found in all cases of diagnosed CJDs <ref> DOI 10.1038/emboj.2009.333 </ref>
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=== Structural implications for the PrPSc propagation ===
=== Structural implications for the PrPSc propagation ===

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Prions

Human prion protein

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Eliška Koutná

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