Deaminase 3D structures
From Proteopedia
(Difference between revisions)
(New page: == 3D Structures of deaminase == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Cytidine deaminase **1r5t ...) |
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*''Cytidine deaminase complex with nucleoside'' | *''Cytidine deaminase complex with nucleoside'' | ||
| + | **[[1mq0]] – hCDA + β-ribofuranosyl diazepinone - human <BR /> | ||
| + | **[[1zab]] – mCDA + deazauridine - mouse <BR /> | ||
| + | **[[2fr5]] – mCDA + tetrahydrouridine <BR /> | ||
| + | **[[2fr6]] – mCDA + cytidine + uridine <BR /> | ||
**[[1ctt]] – EcCDA + dihydro-pyrimidinone – ''Escherichia coli'' <BR /> | **[[1ctt]] – EcCDA + dihydro-pyrimidinone – ''Escherichia coli'' <BR /> | ||
**[[1ctu]] – EcCDA + hydroxyl-dihydro-zebularine <BR /> | **[[1ctu]] – EcCDA + hydroxyl-dihydro-zebularine <BR /> | ||
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**[[1jtk]] – BsCDA + tetrahydrodeoxyuridine - ''Bacillus subtilis'' <BR /> | **[[1jtk]] – BsCDA + tetrahydrodeoxyuridine - ''Bacillus subtilis'' <BR /> | ||
**[[1uwz]], [[1ux0]], [[1ux1]] – BsCDA (mutant) + tetrahydrodeoxyuridine <BR /> | **[[1uwz]], [[1ux0]], [[1ux1]] – BsCDA (mutant) + tetrahydrodeoxyuridine <BR /> | ||
| - | **[[1mq0]] – hCDA + β-ribofuranosyl diazepinone - human <BR /> | ||
| - | **[[1zab]] – mCDA + deazauridine - mouse <BR /> | ||
| - | **[[2fr5]] – mCDA + tetrahydrouridine <BR /> | ||
| - | **[[2fr6]] – mCDA + cytidine + uridine <BR /> | ||
**[[4eg2]] – CDA + uridine - ''Vibrio cholerae'' <BR /> | **[[4eg2]] – CDA + uridine - ''Vibrio cholerae'' <BR /> | ||
*Cytosine deaminase | *Cytosine deaminase | ||
| + | **[[1rb7]], [[1uaq]] – yCDDA <BR /> | ||
| + | **[[1ysb]], [[1ysd]] – yCDDA (mutant)<BR /> | ||
**[[1k6w]] – EcCDDA <BR /> | **[[1k6w]] – EcCDDA <BR /> | ||
**[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]] – EcCDDA (mutant)<BR /> | **[[1r9x]], [[1r9y]], [[1r9z]], [[1ra0]], [[1ra5]], [[3g77]] – EcCDDA (mutant)<BR /> | ||
| - | **[[1rb7]], [[1uaq]] – yCDDA <BR /> | ||
| - | **[[1ysb]], [[1ysd]] – yCDDA (mutant)<BR /> | ||
| - | |||
*''Cytosine deaminase complex'' | *''Cytosine deaminase complex'' | ||
| + | **[[1ox7]] – yCDDA + Zn <BR /> | ||
| + | **[[1p6o]] – yCDDA + pyrimidine derivative<BR /> | ||
| + | **[[2o3k]] – yCDDA (mutant) + pyrimidine derivative<BR /> | ||
**[[3r0d]] – EcCDDA + Zn <BR /> | **[[3r0d]] – EcCDDA + Zn <BR /> | ||
**[[3rn6]] – EcCDDA + Zn + iso-guanine<BR /> | **[[3rn6]] – EcCDDA + Zn + iso-guanine<BR /> | ||
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**[[1rak]] – EcCDDA (mutant) + pyrimidine derivative<BR /> | **[[1rak]] – EcCDDA (mutant) + pyrimidine derivative<BR /> | ||
**[[3o7u]] – EcCDDA + Zn + phosphono-cytosine<BR /> | **[[3o7u]] – EcCDDA + Zn + phosphono-cytosine<BR /> | ||
| - | **[[1ox7]] – yCDDA + Zn <BR /> | ||
| - | **[[1p6o]] – yCDDA + pyrimidine derivative<BR /> | ||
| - | **[[2o3k]] – yCDDA (mutant) + pyrimidine derivative<BR /> | ||
**[[4r7w]], [[4r85]], [[4r88]] – KpCDDA + cytosine derivative – ''Klebsiella pneumoniae''<BR /> | **[[4r7w]], [[4r85]], [[4r88]] – KpCDDA + cytosine derivative – ''Klebsiella pneumoniae''<BR /> | ||
* Deoxycytidylate deaminase | * Deoxycytidylate deaminase | ||
| + | **[[2w4l]] – hDCMP<BR /> | ||
| + | **[[5jfy]] – DCMP - cabbage<BR /> | ||
**[[2hvv]], [[2hvw]] – SmDCMP - ''Streptococcus mutans'' <BR /> | **[[2hvv]], [[2hvw]] – SmDCMP - ''Streptococcus mutans'' <BR /> | ||
**[[1vq2]] – DCMP - Enterobacteria phage T4 <BR /> | **[[1vq2]] – DCMP - Enterobacteria phage T4 <BR /> | ||
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**[[4p9d]] – CyDCMP + TMP <BR /> | **[[4p9d]] – CyDCMP + TMP <BR /> | ||
**[[4p9e]] – CyDCMP <BR /> | **[[4p9e]] – CyDCMP <BR /> | ||
| - | **[[2w4l]] – hDCMP<BR /> | ||
| - | **[[5jfy]] – DCMP - cabbage<BR /> | ||
*Guanine deaminase | *Guanine deaminase | ||
| - | **[[1tiy]], [[1wkq]] – BsGDA <BR /> | ||
**[[3e0l]] – hGDA<br /> | **[[3e0l]] – hGDA<br /> | ||
| + | **[[1tiy]], [[1wkq]] – BsGDA <BR /> | ||
*''Guanine deaminase complex with nucleoside'' | *''Guanine deaminase complex with nucleoside'' | ||
| + | **[[2uz9]] – hGDA + xanthine <BR /> | ||
| + | **[[4aql]] – hGDA + valacyclovir <BR /> | ||
**[[2i9u]] – GDA + guanine – ''Clostridium acetobutylicum'' <BR /> | **[[2i9u]] – GDA + guanine – ''Clostridium acetobutylicum'' <BR /> | ||
**[[2ood]] – GDA + guanine – ''Bradrhizobium japonicum'' <BR /> | **[[2ood]] – GDA + guanine – ''Bradrhizobium japonicum'' <BR /> | ||
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**[[4ld2]] – NeGDA + cytidine<BR /> | **[[4ld2]] – NeGDA + cytidine<BR /> | ||
**[[4ld4]] – NeGDA + cytosine<BR /> | **[[4ld4]] – NeGDA + cytosine<BR /> | ||
| - | **[[2uz9]] – hGDA + xanthine <BR /> | ||
| - | **[[4aql]] – hGDA + valacyclovir <BR /> | ||
*Adenine deaminase | *Adenine deaminase | ||
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**[[1dea]], [[1cd5]], [[1fs6]], [[1fsf]] – EcGPD <BR /> | **[[1dea]], [[1cd5]], [[1fs6]], [[1fsf]] – EcGPD <BR /> | ||
**[[1jt9]] – EcGPD (mutant) <BR /> | **[[1jt9]] – EcGPD (mutant) <BR /> | ||
| + | **[[1hor]] – EcGPD + deoxy-amino glucitol-phosphate<BR /> | ||
| + | **[[1hot]], [[1frz]], [[1fs5]], [[2wu1]] – EcGPD + N-acetyl-glucosamine-6-phosphate<BR /> | ||
| + | **[[1fqo]] – EcGPD + fructose 6-phosphate<BR /> | ||
**[[2ri0]] – SmGPD – ''Streptococcus mutans'' <BR /> | **[[2ri0]] – SmGPD – ''Streptococcus mutans'' <BR /> | ||
| + | **[[2ri1]] – SmGPD + glucosamine-6-phosphate<BR /> | ||
**[[6nbg]] – KpGPD <BR /> | **[[6nbg]] – KpGPD <BR /> | ||
**[[3hn6]] – GPD – ''Borrelia burgdorferi''<br /> | **[[3hn6]] – GPD – ''Borrelia burgdorferi''<br /> | ||
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**[[4r7t]] – VcGPD <br /> | **[[4r7t]] – VcGPD <br /> | ||
**[[5hj5]] – VcGPD + fructose 6-phosphate + glucose-6-phosphate<BR /> | **[[5hj5]] – VcGPD + fructose 6-phosphate + glucose-6-phosphate<BR /> | ||
| - | **[[1hor]] – EcGPD + deoxy-amino glucitol-phosphate<BR /> | ||
| - | **[[1hot]], [[1frz]], [[1fs5]], [[2wu1]] – EcGPD + N-acetyl-glucosamine-6-phosphate<BR /> | ||
| - | **[[1fqo]] – EcGPD + fructose 6-phosphate<BR /> | ||
| - | **[[2ri1]] – SmGPD + glucosamine-6-phosphate<BR /> | ||
*1-aminocyclopropane-1-carboxylate (ACC) deaminase | *1-aminocyclopropane-1-carboxylate (ACC) deaminase | ||
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**[[1wn5]], [[2z3g]] – AtBSD – ''Aspergillus terreus'' <BR /> | **[[1wn5]], [[2z3g]] – AtBSD – ''Aspergillus terreus'' <BR /> | ||
**[[2z3j]] – AtBSD (mutant) <BR /> | **[[2z3j]] – AtBSD (mutant) <BR /> | ||
| - | **[[3oj6]] – BSD – Coccidioides immitis <BR /> | ||
**[[1wn6]] – AtBSD + blasticidin-S intermediate<BR /> | **[[1wn6]] – AtBSD + blasticidin-S intermediate<BR /> | ||
**[[2z3h]] – AtBSD + deaminohydroxy blasticidin-S <BR /> | **[[2z3h]] – AtBSD + deaminohydroxy blasticidin-S <BR /> | ||
**[[2z3i]] – AtBSD (mutant) + blasticidin-S <BR /> | **[[2z3i]] – AtBSD (mutant) + blasticidin-S <BR /> | ||
| + | **[[3oj6]] – BSD – Coccidioides immitis <BR /> | ||
*Threonine deaminase | *Threonine deaminase | ||
| + | **[[3iau]] – THD + PLP derivative – tomato<BR /> | ||
**[[1tdj]] – EcTHD + PLP <BR /> | **[[1tdj]] – EcTHD + PLP <BR /> | ||
**[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR /> | **[[2gn0]], [[2gn1]] – StTHD + PLP derivative – ''Salmonella typhimurium''<BR /> | ||
**[[2gn2]] – StTHD + PLP derivative + CMP<BR /> | **[[2gn2]] – StTHD + PLP derivative + CMP<BR /> | ||
| - | **[[3iau]] – THD + PLP derivative – tomato<BR /> | ||
**[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR /> | **[[1ve5]] – THD + PLP – ''Thermus thermophilus''<BR /> | ||
*L-serine deaminase | *L-serine deaminase | ||
| - | **[[1pwe]] – rLSD - rat <BR /> | ||
**[[1p5j]], [[2rkb]] – hLSD (mutant) + PLP <BR /> | **[[1p5j]], [[2rkb]] – hLSD (mutant) + PLP <BR /> | ||
| + | **[[1pwe]] – rLSD - rat <BR /> | ||
**[[1pwh]] – rLSD + PLP derivative <BR /> | **[[1pwh]] – rLSD + PLP derivative <BR /> | ||
Revision as of 07:34, 13 July 2020
3D Structures of deaminase
Updated on 13-July-2020
