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| <StructureSection load='6f5v' size='340' side='right'caption='[[6f5v]], [[Resolution|resolution]] 1.70Å' scene=''> | | <StructureSection load='6f5v' size='340' side='right'caption='[[6f5v]], [[Resolution|resolution]] 1.70Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6f5v]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6F5V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6F5V FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6f5v]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6F5V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6F5V FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PAT, AAT, MEE17, At2g22250, T26C19.9 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6f5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6f5v OCA], [http://pdbe.org/6f5v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6f5v RCSB], [http://www.ebi.ac.uk/pdbsum/6f5v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6f5v ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6f5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6f5v OCA], [https://pdbe.org/6f5v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6f5v RCSB], [https://www.ebi.ac.uk/pdbsum/6f5v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6f5v ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/PAT_ARATH PAT_ARATH]] Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Required for early development of the embryo.<ref>PMID:15634699</ref> <ref>PMID:16623902</ref> <ref>PMID:20883697</ref> | + | [https://www.uniprot.org/uniprot/PAT_ARATH PAT_ARATH] Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Required for early development of the embryo.<ref>PMID:15634699</ref> <ref>PMID:16623902</ref> <ref>PMID:20883697</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Arath]] | + | [[Category: Arabidopsis thaliana]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Cobessi, D]] | + | [[Category: Cobessi D]] |
- | [[Category: Giustini, C]] | + | [[Category: Giustini C]] |
- | [[Category: Graindorge, M]] | + | [[Category: Graindorge M]] |
- | [[Category: Matringe, M]] | + | [[Category: Matringe M]] |
- | [[Category: Robin, A]] | + | [[Category: Robin A]] |
- | [[Category: Prephenate aminotransferase arabidopsis thaliana]]
| + | |
- | [[Category: Transferase]]
| + | |
| Structural highlights
Function
PAT_ARATH Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Required for early development of the embryo.[1] [2] [3]
Publication Abstract from PubMed
Alternative routes for the post-chorismate branch of the biosynthetic pathway leading to tyrosine exist, the 4-hydroxyphenylpyruvate or the arogenate route. The arogenate route involves the transamination of prephenate into arogenate. In a previous study, we found that, depending on the microorganisms possessing the arogenate route, three different aminotransferases evolved to perform prephenate transamination i.e. 1beta aspartate aminotransferase (1beta AAT), N-succinyl-l,l-diaminopimelate aminotransferase, and branched-chain aminotransferase. The present work aimed at identifying molecular determinant(s) of 1beta AAT prephenate aminotransferase (PAT) activity. To that purpose, we conducted X-ray crystal structure analysis of two PAT competent 1beta AAT from Arabidopsis thaliana and Rhizobium meliloti, and one PAT incompetent 1beta AAT from Rhizobium meliloti. This structural analysis supported by site directed mutagenesis, modelling and molecular dynamics simulations allowed us to identify a molecular determinant of PAT activity in the flexible N-terminal loop of 1beta AAT. Our data reveal that a Lys/Arg/Gln residue in position 12 in the sequence (numbering according to Thermus thermophilus 1beta AAT), present only in PAT competent enzymes, could interact with the 4-hydroxyl group of the prephenate substrate, and thus may have a central role in the acquisition of PAT activity by 1beta AAT. This article is protected by copyright. All rights reserved.
Tyrosine metabolism: identification of a key residue in the acquisition of prephenate aminotransferase activity by 1beta aspartate aminotransferase.,Giustini C, Graindorge M, Cobessi D, Crouzy S, Robin A, Curien G, Matringe M FEBS J. 2019 Feb 16. doi: 10.1111/febs.14789. PMID:30771275[4]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Pagnussat GC, Yu HJ, Ngo QA, Rajani S, Mayalagu S, Johnson CS, Capron A, Xie LF, Ye D, Sundaresan V. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Development. 2005 Feb;132(3):603-14. Epub 2005 Jan 5. PMID:15634699 doi:http://dx.doi.org/dev.01595
- ↑ de la Torre F, De Santis L, Suarez MF, Crespillo R, Canovas FM. Identification and functional analysis of a prokaryotic-type aspartate aminotransferase: implications for plant amino acid metabolism. Plant J. 2006 May;46(3):414-25. PMID:16623902 doi:http://dx.doi.org/TPJ2713
- ↑ Graindorge M, Giustini C, Jacomin AC, Kraut A, Curien G, Matringe M. Identification of a plant gene encoding glutamate/aspartate-prephenate aminotransferase: the last homeless enzyme of aromatic amino acids biosynthesis. FEBS Lett. 2010 Oct 22;584(20):4357-60. doi: 10.1016/j.febslet.2010.09.037. Epub , 2010 Sep 29. PMID:20883697 doi:http://dx.doi.org/10.1016/j.febslet.2010.09.037
- ↑ Giustini C, Graindorge M, Cobessi D, Crouzy S, Robin A, Curien G, Matringe M. Tyrosine metabolism: identification of a key residue in the acquisition of prephenate aminotransferase activity by 1beta aspartate aminotransferase. FEBS J. 2019 Feb 16. doi: 10.1111/febs.14789. PMID:30771275 doi:http://dx.doi.org/10.1111/febs.14789
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