This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6qlj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:03, 24 January 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6qlj' size='340' side='right'caption='[[6qlj]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
<StructureSection load='6qlj' size='340' side='right'caption='[[6qlj]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6qlj]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QLJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QLJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6qlj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QLJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QLJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4LS:1-DEOXY-1-[7,8-DIMETHYL-5-(3-METHYLBUT-2-EN-1-YL)-2,4-DIOXO-1,3,4,5-TETRAHYDROBENZO[G]PTERIDIN-10(2H)-YL]-5-O-PHOSPHONO-D-RIBITOL'>4LS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.77&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Flavin_prenyltransferase Flavin prenyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.129 2.5.1.129] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4LS:1-DEOXY-1-[7,8-DIMETHYL-5-(3-METHYLBUT-2-EN-1-YL)-2,4-DIOXO-1,3,4,5-TETRAHYDROBENZO[G]PTERIDIN-10(2H)-YL]-5-O-PHOSPHONO-D-RIBITOL'>4LS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qlj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qlj OCA], [http://pdbe.org/6qlj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qlj RCSB], [http://www.ebi.ac.uk/pdbsum/6qlj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qlj ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qlj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qlj OCA], [https://pdbe.org/6qlj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qlj RCSB], [https://www.ebi.ac.uk/pdbsum/6qlj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qlj ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/A0A072ZCW8_PSEAI A0A072ZCW8_PSEAI]] Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.[HAMAP-Rule:MF_01984]
+
[https://www.uniprot.org/uniprot/A0A072ZCW8_PSEAI A0A072ZCW8_PSEAI] Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.[HAMAP-Rule:MF_01984]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Flavin prenyltransferase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Leys, D]]
+
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Marshall, S A]]
+
[[Category: Leys D]]
-
[[Category: Transferase]]
+
[[Category: Marshall SA]]
-
[[Category: Ubix prenyltransferase flavin binding]]
+

Current revision

Crystal structure of F181Q UbiX in complex with an oxidised N5-C1' adduct derived from DMAP

PDB ID 6qlj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6qlj"
Personal tools