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| <StructureSection load='4yk1' size='340' side='right'caption='[[4yk1]], [[Resolution|resolution]] 2.10Å' scene=''> | | <StructureSection load='4yk1' size='340' side='right'caption='[[4yk1]], [[Resolution|resolution]] 2.10Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4yk1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bartonella_rochalimae_atcc_baa-1498 Bartonella rochalimae atcc baa-1498]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YK1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YK1 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4yk1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bartonella_rochalimae_ATCC_BAA-1498 Bartonella rochalimae ATCC BAA-1498]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YK1 FirstGlance]. <br> |
- | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4yk2|4yk2]], [[4yk3|4yk3]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yk1 OCA], [https://pdbe.org/4yk1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yk1 RCSB], [https://www.ebi.ac.uk/pdbsum/4yk1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yk1 ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BARRO_50054, O99_01278 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=685782 Bartonella rochalimae ATCC BAA-1498])</td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yk1 OCA], [http://pdbe.org/4yk1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yk1 RCSB], [http://www.ebi.ac.uk/pdbsum/4yk1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yk1 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/E6YLF3_9HYPH E6YLF3_9HYPH] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bartonella rochalimae atcc baa-1498]] | + | [[Category: Bartonella rochalimae ATCC BAA-1498]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Structural genomic]] | |
- | [[Category: Bartonella rochalimae]] | |
- | [[Category: Bep6]] | |
- | [[Category: Bid domain]] | |
- | [[Category: Protein binding]] | |
- | [[Category: Ssgcid]] | |
- | [[Category: Virb-translocated bartonella effector protein]] | |
| Structural highlights
Function
E6YLF3_9HYPH
Publication Abstract from PubMed
The BID (Bep intracellular delivery) domain functions as secretion signal in a subfamily of protein substrates of bacterial type IV secretion (T4S) systems. It mediates transfer of (1) relaxases and the attached DNA during bacterial conjugation, and (2) numerous Bartonella effector proteins (Beps) during protein transfer into host cells infected by pathogenic Bartonella species. Furthermore, BID domains of Beps have often evolved secondary effector functions within host cells. Here, we provide crystal structures for three representative BID domains and describe a novel conserved fold characterized by a compact, antiparallel four-helix bundle topped with a hook. The conserved hydrophobic core provides a rigid scaffold to a surface that, despite a few conserved exposed residues and similarities in charge distribution, displays significant variability. We propose that the genuine function of BID domains as T4S signal may primarily depend on their rigid structure, while the plasticity of their surface may facilitate adaptation to secondary effector functions.
The BID Domain of Type IV Secretion Substrates Forms a Conserved Four-Helix Bundle Topped with a Hook.,Stanger FV, de Beer TA, Dranow DM, Schirmer T, Phan I, Dehio C Structure. 2017 Jan 3;25(1):203-211. doi: 10.1016/j.str.2016.10.010. Epub 2016, Nov 23. PMID:27889208[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Stanger FV, de Beer TA, Dranow DM, Schirmer T, Phan I, Dehio C. The BID Domain of Type IV Secretion Substrates Forms a Conserved Four-Helix Bundle Topped with a Hook. Structure. 2017 Jan 3;25(1):203-211. doi: 10.1016/j.str.2016.10.010. Epub 2016, Nov 23. PMID:27889208 doi:http://dx.doi.org/10.1016/j.str.2016.10.010
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