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4ymd

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<StructureSection load='4ymd' size='340' side='right'caption='[[4ymd]], [[Resolution|resolution]] 2.87&Aring;' scene=''>
<StructureSection load='4ymd' size='340' side='right'caption='[[4ymd]], [[Resolution|resolution]] 2.87&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4ymd]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YMD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YMD FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4ymd]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YMD FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=PRD_900111:2alpha-alpha-mannobiose'>PRD_900111</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">COLEC11, UNQ596/PRO1182 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ymd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ymd OCA], [https://pdbe.org/4ymd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ymd RCSB], [https://www.ebi.ac.uk/pdbsum/4ymd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ymd ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ymd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ymd OCA], [http://pdbe.org/4ymd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4ymd RCSB], [http://www.ebi.ac.uk/pdbsum/4ymd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4ymd ProSAT]</span></td></tr>
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</table>
</table>
== Disease ==
== Disease ==
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[[http://www.uniprot.org/uniprot/COL11_HUMAN COL11_HUMAN]] Craniofacial-ulnar-renal syndrome. The disease is caused by mutations affecting the gene represented in this entry.
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[https://www.uniprot.org/uniprot/COL11_HUMAN COL11_HUMAN] Craniofacial-ulnar-renal syndrome. The disease is caused by mutations affecting the gene represented in this entry.
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/COL11_HUMAN COL11_HUMAN]] Lectin that binds to various sugars including fucose and mannose. Has a higher affinity for fucose compared to mannose. Does not bind to glucose, N-acetylglucosamine and N-acetylgalactosamine. Also binds lipopolysaccharides (LPS). Involved in fundamental development serving as a guidance cue for neural crest cell migration (By similarity).
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[https://www.uniprot.org/uniprot/COL11_HUMAN COL11_HUMAN] Lectin that binds to various sugars including fucose and mannose. Has a higher affinity for fucose compared to mannose. Does not bind to glucose, N-acetylglucosamine and N-acetylgalactosamine. Also binds lipopolysaccharides (LPS). Involved in fundamental development serving as a guidance cue for neural crest cell migration (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Gingras, A R]]
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[[Category: Gingras AR]]
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[[Category: Girija, U Venkatraman]]
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[[Category: Marshall JE]]
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[[Category: Marshall, J E]]
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[[Category: Moody PCE]]
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[[Category: Moody, P C.E]]
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[[Category: Venkatraman Girija U]]
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[[Category: Wallis, R]]
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[[Category: Wallis R]]
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[[Category: C-type carbohydrate-recognition domain]]
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[[Category: C-type lectin]]
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[[Category: Collectin]]
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[[Category: Sugar binding protein]]
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Revision as of 08:18, 3 May 2023

CL-K1 trimer bound to man(alpha1-2)man

PDB ID 4ymd

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