|
|
Line 3: |
Line 3: |
| <StructureSection load='4z7a' size='340' side='right'caption='[[4z7a]], [[Resolution|resolution]] 1.98Å' scene=''> | | <StructureSection load='4z7a' size='340' side='right'caption='[[4z7a]], [[Resolution|resolution]] 1.98Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4z7a]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycta Mycta]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Z7A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Z7A FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4z7a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Ra Mycobacterium tuberculosis H37Ra]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Z7A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Z7A FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3tur|3tur]], [[3u1q|3u1q]], [[3vae|3vae]], [[3u1p|3u1p]], [[3tx4|3tx4]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4z7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4z7a OCA], [https://pdbe.org/4z7a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4z7a RCSB], [https://www.ebi.ac.uk/pdbsum/4z7a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4z7a ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lprQ, MRA_0490 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=419947 MYCTA])</td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4z7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4z7a OCA], [http://pdbe.org/4z7a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4z7a RCSB], [http://www.ebi.ac.uk/pdbsum/4z7a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4z7a ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/A5TZL1_MYCTA A5TZL1_MYCTA] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 23: |
Line 23: |
| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Mycta]] | + | [[Category: Mycobacterium tuberculosis H37Ra]] |
- | [[Category: Basta, L]] | + | [[Category: Basta L]] |
- | [[Category: Bianchet, M A]] | + | [[Category: Bianchet MA]] |
- | [[Category: Ghosh, A]] | + | [[Category: Ghosh A]] |
- | [[Category: Jakoncic, J]] | + | [[Category: Jakoncic J]] |
- | [[Category: Lamichhane, G]] | + | [[Category: Lamichhane G]] |
- | [[Category: Lloyd, E]] | + | [[Category: Lloyd E]] |
- | [[Category: Pan, Y]] | + | [[Category: Pan Y]] |
- | [[Category: Townsend, G]] | + | [[Category: Townsend G]] |
- | [[Category: Antibiotic]]
| + | |
- | [[Category: Carbapenem]]
| + | |
- | [[Category: Cell wall]]
| + | |
- | [[Category: Cell wall biosynthesis]]
| + | |
- | [[Category: Enzyme kinetic]]
| + | |
- | [[Category: Enzyme structure]]
| + | |
- | [[Category: Nitrocefin]]
| + | |
- | [[Category: Peptidoglycan]]
| + | |
- | [[Category: Transferase]]
| + | |
| Structural highlights
Function
A5TZL1_MYCTA
Publication Abstract from PubMed
The final step of peptidoglycan (PG) biosynthesis in bacteria involves crosslinking of peptide side chains. This step in Mycobacterium tuberculosis is catalyzed by L,D- and D,D-transpeptidases that generate 3-->3 and 4-->3 transpeptide linkages, respectively. M. tuberculosis PG is predominantly 3-->3 crosslinked and LdtMt2 is the dominant L,D-transpeptidase. There are four additional sequence paralogs of LdtMt2 encoded by the genome of this pathogen and the reason for this apparent redundancy is unknown. Here, we have studied one of the paralogs, LdtMt5, and found it to be structurally and functionaly distinct. The structures of apo-LdtMt5 and its Meropenem adduct presented here demonstrate that, despite overall architectural similarity to LdtMt2, the LdtMt5 active site has marked differences. The presence of a structurally divergent catalytic site and a proline-rich C-terminal subdomain suggest this protein may have a distinct role in PG metabolism, perhaps involving other cell wall-anchored proteins. Further, M. tuberculosis lacking a functional copy of LdtMt5 displays aberrant growth, and is more susceptible to killing by crystal violet, osmotic shock, and select carbapenem antibiotics. Therefore, we conclude LdtMt5 is not a functionally redundant L,D-transpeptidase, but rather it serves a unique and important role in maintaining the integrity of the M. tuberculosis cell wall.
Loss of a functionally and structurally distinct L,D-transpeptidase, LdtMt5, compromises cell wall integrity in Mycobacterium tuberculosis.,Brammer Basta LA, Ghosh A, Pan Y, Jean J, Lloyd EP, Townsend CA, Lamichhane G, Bianchet MA J Biol Chem. 2015 Aug 24. pii: jbc.M115.660753. PMID:26304120[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Brammer Basta LA, Ghosh A, Pan Y, Jean J, Lloyd EP, Townsend CA, Lamichhane G, Bianchet MA. Loss of a functionally and structurally distinct L,D-transpeptidase, LdtMt5, compromises cell wall integrity in Mycobacterium tuberculosis. J Biol Chem. 2015 Aug 24. pii: jbc.M115.660753. PMID:26304120 doi:http://dx.doi.org/10.1074/jbc.M115.660753
|