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| <StructureSection load='5a4k' size='340' side='right'caption='[[5a4k]], [[Resolution|resolution]] 2.09Å' scene=''> | | <StructureSection load='5a4k' size='340' side='right'caption='[[5a4k]], [[Resolution|resolution]] 2.09Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5a4k]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A4K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5A4K FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5a4k]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5A4K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5A4K FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/NAD(P)H_dehydrogenase_(quinone) NAD(P)H dehydrogenase (quinone)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.6.5.2 1.6.5.2] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5a4k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a4k OCA], [https://pdbe.org/5a4k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5a4k RCSB], [https://www.ebi.ac.uk/pdbsum/5a4k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5a4k ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5a4k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5a4k OCA], [http://pdbe.org/5a4k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5a4k RCSB], [http://www.ebi.ac.uk/pdbsum/5a4k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5a4k ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/NQO1_HUMAN NQO1_HUMAN]] The enzyme apparently serves as a quinone reductase in connection with conjugation reactions of hydroquinons involved in detoxification pathways as well as in biosynthetic processes such as the vitamin K-dependent gamma-carboxylation of glutamate residues in prothrombin synthesis. | + | [https://www.uniprot.org/uniprot/NQO1_HUMAN NQO1_HUMAN] The enzyme apparently serves as a quinone reductase in connection with conjugation reactions of hydroquinons involved in detoxification pathways as well as in biosynthetic processes such as the vitamin K-dependent gamma-carboxylation of glutamate residues in prothrombin synthesis. |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 5a4k" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 5a4k" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[NADPH dehydrogenase|NADPH dehydrogenase]] |
| + | *[[Quinone reductase|Quinone reductase]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Human]] | + | [[Category: Homo sapiens]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Gruber, K]] | + | [[Category: Gruber K]] |
- | [[Category: Gudipati, V]] | + | [[Category: Gudipati V]] |
- | [[Category: Lienhart, W D]] | + | [[Category: Lienhart WD]] |
- | [[Category: Macheroux, P]] | + | [[Category: Macheroux P]] |
- | [[Category: Rantase, D M]] | + | [[Category: Rantase DM]] |
- | [[Category: Strandback, E]] | + | [[Category: Strandback E]] |
- | [[Category: Uhl, M K]] | + | [[Category: Uhl MK]] |
- | [[Category: Zangger, K]] | + | [[Category: Zangger K]] |
- | [[Category: Drug metabolism]]
| + | |
- | [[Category: Fad]]
| + | |
- | [[Category: Flavoprotein]]
| + | |
- | [[Category: Nqo1]]
| + | |
- | [[Category: Oxidative stress]]
| + | |
- | [[Category: Oxidoreductase]]
| + | |
- | [[Category: Quinone reductase]]
| + | |
- | [[Category: Single amino acid exchange]]
| + | |
| Structural highlights
Function
NQO1_HUMAN The enzyme apparently serves as a quinone reductase in connection with conjugation reactions of hydroquinons involved in detoxification pathways as well as in biosynthetic processes such as the vitamin K-dependent gamma-carboxylation of glutamate residues in prothrombin synthesis.
Publication Abstract from PubMed
The human NAD(P)H:quinone oxidoreductase 1 (NQO1; EC 1.6.99.2) is an essential enzyme in the antioxidant defence system. Furthermore, NQO1 protects tumour suppressors like p53, p33ING1b and p73 from proteasomal degradation. The activity of NQO1 is also exploited in chemotherapy for the activation of quinone-based treatments. Various single nucleotide polymorphisms are known, such as NQO1*2 and NQO1*3 yielding protein variants of NQO1 with single amino acid replacements, i.e. P187S and R139W, respectively. While the former NOQ1 variant is linked to a higher risk for specific kinds of cancer, the role, if any, of the arginine 139 to tryptophan exchange in disease development remains obscure. On the other hand, mitomycin C resistant human colon cancer cells were shown to harbour the NQO1*3 variant resulting in substantially reduced enzymatic activity. However, the molecular cause for this decrease remains unclear. In order to resolve this issue, recombinant NQO1 R139W has been characterized biochemically and structurally. In this report we show by X-ray crystallography and 2D-NMR spectroscopy that this variant adopts the same structure both in the crystal as well as in solution. Furthermore, the kinetic parameters obtained for the variant are similar to those reported for the wild-type protein. Similarly, thermostability of the variant was only slightly affected by the amino acid replacement. Therefore, we conclude that the previously reported effects in human cancer cells cannot be attributed to protein stability or enzyme activity. Instead it appears that loss of exon 4 during maturation of a large fraction of pre-mRNA is the major reason of the observed lack of enzyme activity and hence reduced activation of quinone-based chemotherapeutics. This article is protected by copyright. All rights reserved.
Catalytic competence, structure and stability of the cancer associated R139W variant of the human NAD(P)H:quinone oxidoreductase 1 (NQO1).,Lienhart WD, Strandback E, Gudipati V, Koch K, Binter A, Uhl MK, Rantasa DM, Bourgeois B, Madl T, Zangger K, Gruber K, Macheroux P FEBS J. 2017 Feb 25. doi: 10.1111/febs.14051. PMID:28236663[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Lienhart WD, Strandback E, Gudipati V, Koch K, Binter A, Uhl MK, Rantasa DM, Bourgeois B, Madl T, Zangger K, Gruber K, Macheroux P. Catalytic competence, structure and stability of the cancer associated R139W variant of the human NAD(P)H:quinone oxidoreductase 1 (NQO1). FEBS J. 2017 Feb 25. doi: 10.1111/febs.14051. PMID:28236663 doi:http://dx.doi.org/10.1111/febs.14051
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