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Ferritin 3D structures

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(New page: ==3D Structures of Ferritin== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Ferritin **2jd6, 2jd7 – P...)
Line 6: Line 6:
*Ferritin
*Ferritin
-
**[[2jd6]], [[2jd7]] – PfFR - ''Pyrococcus furiosus'' <br />
+
**[[6kh0]] – prFR (mutant) + Fe - prawn<br />
-
**[[3a68]] – soFR from gene SferH4 – soybean<br />
+
**[[6kh1]], [[6kh3]], [[6kh4]], [[6kh5]] – prFR (mutant) + Fe + Ni<br />
 +
**[[6kzy]] – coFR + Cu - cockle<br />
 +
**[[6l55]], [[6l56]], [[6l58]] – coFR + Fe<br />
 +
**[[6lp5]] – FR + Fe - clam<br />
 +
**[[6j4j]], [[6j4m]] – soFR (mutant) – soybean<br />
 +
**[[3a68]] – soFR from gene SferH4<br />
**[[3a9q]] - soFR from gene SferH4 (mutant) <br />
**[[3a9q]] - soFR from gene SferH4 (mutant) <br />
**[[3egm]], [[3bve]], [[3bvf]], [[3bvi]], [[3bvk]], [[3bvl]] – HpFR – ''Heliobacter pylori''<br />
**[[3egm]], [[3bve]], [[3bvf]], [[3bvi]], [[3bvk]], [[3bvl]] – HpFR – ''Heliobacter pylori''<br />
Line 15: Line 20:
**[[1krq]] – FR – ''Campylobacter jejuni''<br />
**[[1krq]] – FR – ''Campylobacter jejuni''<br />
**[[1eum]] - EcFR – ''Escherichia coli''<br />
**[[1eum]] - EcFR – ''Escherichia coli''<br />
 +
**[[4reu]] – EcFR + Fe<br />
 +
**[[4xgs]] – EcFR (mutant) + Fe2O2<br />
 +
**[[4ztt]] – EcFR (mutant) + Fe2O + Fe2 + Fe + O2<br />
**[[1qgh]] – LiFR - ''Listeria innocua''<br />
**[[1qgh]] – LiFR - ''Listeria innocua''<br />
**[[3qz3]] - VcFR – ''Vibrio cholerae''<br / >
**[[3qz3]] - VcFR – ''Vibrio cholerae''<br / >
Line 23: Line 31:
**[[5n5f]] – FR – ''Haliangium ochraceum''<br />
**[[5n5f]] – FR – ''Haliangium ochraceum''<br />
**[[5ouz]], [[5ouw]] – SyFR – ''Synechococcus''<br />
**[[5ouz]], [[5ouw]] – SyFR – ''Synechococcus''<br />
 +
**[[6som]], [[6sop]] – SyFR (mutant) <br />
**[[6gkc]], [[6gka]] – SyFR + Fe <br />
**[[6gkc]], [[6gka]] – SyFR + Fe <br />
-
**[[6gkb]] – SyFR (mutant) + Fe <br />
+
**[[6gkb]], [[6son]], [[6soo]], [[6soq]], [[6sor]] – SyFR (mutant) + Fe <br />
**[[6a4u]] – FR (mutant) – ''Marsupenaeus japonicus'' <br />
**[[6a4u]] – FR (mutant) – ''Marsupenaeus japonicus'' <br />
-
**[[4reu]] – EcFR + Fe<br />
 
-
**[[4xgs]] – EcFR (mutant) + Fe2O2<br />
 
-
**[[4ztt]] – EcFR (mutant) + Fe2O + Fe2 + Fe + O2<br />
 
**[[4cmy]] – FR + Fe – ''Chlorobaculum tepidum''<br />
**[[4cmy]] – FR + Fe – ''Chlorobaculum tepidum''<br />
 +
**[[2jd6]], [[2jd7]] – PfFR - ''Pyrococcus furiosus'' <br />
*Ferritin light chain (FTL)
*Ferritin light chain (FTL)
Line 38: Line 45:
**[[3noz]], [[3np0]], [[3np2]], [[3o7r]] – hoFTL (mutant) <br />
**[[3noz]], [[3np0]], [[3np2]], [[3o7r]] – hoFTL (mutant) <br />
**[[5lg2]] - hoFTL + Fe<br />
**[[5lg2]] - hoFTL + Fe<br />
 +
**[[6fx9]] - hoFTL + Au + Cd<br />
**[[5czu]] - hoFTL (mutant) + Fe<br />
**[[5czu]] - hoFTL (mutant) + Fe<br />
**[[3rav]], [[3rd0]] – hoFTL + barbiturate
**[[3rav]], [[3rd0]] – hoFTL + barbiturate
Line 57: Line 65:
*Ferritin heavy subunit (FTH)
*Ferritin heavy subunit (FTH)
-
**[[5gou]], [[5yi5]] – hFTH <br />
+
**[[5gou]], [[5yi5]], [[6j4a]], [[6job]] – hFTH <br />
-
**[[5xb1]], [[6ipc]], [[5znd]] – hFTH (mutant)<br />
+
**[[5xb1]], [[6ipc]], [[5znd]], [[6j7g]], [[6jps]], [[6ke2]], [[6ke4]] – hFTH (mutant)<br />
-
**[[4oyn]], [[4y08]], [[4zjk]], [[5jkk]], [[5jkl]], [[5jkm]], [[6b8g]], [[6b8f]], [[4ykh]] – hFTH + Fe<br />
+
**[[4oyn]], [[4y08]], [[4zjk]], [[5jkk]], [[5jkl]], [[5jkm]], [[6b8g]], [[6b8f]], [[4ykh]], [[6h6u]], [[6m52]], [[6m54]] – hFTH + Fe<br />
**[[6ipp]] – hFTH (mutant) + Fe<br />
**[[6ipp]] – hFTH (mutant) + Fe<br />
-
**[[3wnw]] – mFTL + Fe<br />
+
**[[6v21]] – mFTH – Cryo EM<br />
-
**[[5obA]] – mFTL (mutant) + Fe<br />
+
**[[3wnw]] – mFTH + Fe<br />
 +
**[[6sht]] – mFTH + Fe – Cryo EM<br />
 +
**[[5obA]] – mFTH (mutant) + Fe<br />
**[[2z6o]] – FTH – ''Trichoplusia ni''<br />
**[[2z6o]] – FTH – ''Trichoplusia ni''<br />
Line 77: Line 87:
**[[2fg8]] – apo-hFTL + Cs<br />
**[[2fg8]] – apo-hFTL + Cs<br />
-
**[[3kxu]], [[2ffx]], [[2fg4]] - apo-hFTL+ Cd<br />
+
**[[3kxu]], [[2ffx]], [[2fg4]], [[6jee]], [[6jef]] - apo-hFTL+ Cd<br />
 +
**[[6wx6]] - apo-hFTL(mutant) + Ca – Cryo EM<br />
 +
**[[6pxm]] – apo-hoFTL<br />
**[[2zg7]], [[2z5p]], [[2z5q]], [[2z5r]], [[3fi6]], [[3af7]], [[5e2d]], [[5hqo]] – apo-hoFTL+Pd<br />
**[[2zg7]], [[2z5p]], [[2z5q]], [[2z5r]], [[3fi6]], [[3af7]], [[5e2d]], [[5hqo]] – apo-hoFTL+Pd<br />
**[[2zg8]], [[2zg9]], [[3af8]], [[3af9]], [[3noz]], [[3np0]], [[3np2]] - apo-hoFTL (mutant)+Pd<br />
**[[2zg8]], [[2zg9]], [[3af8]], [[3af9]], [[3noz]], [[3np0]], [[3np2]] - apo-hoFTL (mutant)+Pd<br />
Line 85: Line 97:
**[[3o7r]], [[3wvu]], [[3wvv]] - apo-hoFTL (mutant) + Ru<br />
**[[3o7r]], [[3wvu]], [[3wvv]] - apo-hoFTL (mutant) + Ru<br />
**[[4z3b]] - apo-hoFTL + Mn<br />
**[[4z3b]] - apo-hoFTL + Mn<br />
-
**[[5axs]], [[5e1u]], [[5erj]], [[5erk]], [[5ix6]], [[5mij]], [[5mik]], [[2w0o]], [[3f32]], [[1ies]], [[1ier]], [[1dat]], [[1aew]], [[2g4h]], [[2za6]] - apo-hoFTL + Cd<br />
+
**[[5axs]], [[5e1u]], [[5erj]], [[5erk]], [[5ix6]], [[5mij]], [[5mik]], [[2w0o]], [[3f32]], [[1ies]], [[1ier]], [[1dat]], [[1aew]], [[2g4h]], [[2za6]], [[6ra8]] - apo-hoFTL + Cd<br />
**[[6hju]], [[6hjt]] – apo-hoFTL + Pt<br />
**[[6hju]], [[6hjt]] – apo-hoFTL + Pt<br />
**[[6fj9]], [[6fx8]], [[6enw]], [[6env]] – apo-hoFTL + Au<br />
**[[6fj9]], [[6fx8]], [[6enw]], [[6env]] – apo-hoFTL + Au<br />
Line 104: Line 116:
*apo-ferritin heavy chain (apo-FTH)
*apo-ferritin heavy chain (apo-FTH)
 +
**[[6z6u]], [[6z9e]], [[6z9f]] – apo-hFTH – Cryo EM<br />
**[[3erz]] – apo-hFTH+Hg<br />
**[[3erz]] – apo-hFTH+Hg<br />
**[[3es3]] - apo-hFTH+Au<br />
**[[3es3]] - apo-hFTH+Au<br />
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**[[4dyx]], [[4dyy]], [[4dyz]], [[4dz0]] – apo-hFTH (mutant) + Cu<br />
**[[4dyx]], [[4dyy]], [[4dyz]], [[4dz0]] – apo-hFTH (mutant) + Cu<br />
**[[5gu0]], [[5gu1]], [[5gu2]], [[5gu3]], [[2za7]], [[2za8]] - apo-hoFTH (mutant) + Cd<br />
**[[5gu0]], [[5gu1]], [[5gu2]], [[5gu3]], [[2za7]], [[2za8]] - apo-hoFTH (mutant) + Cd<br />
 +
**[[6s61]] - apo-mFTH + Fe + Zn<br />
**[[5obb]] – mFTL + Tb<br />
**[[5obb]] – mFTL + Tb<br />
Line 140: Line 154:
**[[5d8p]] - PaBFR + Fe<br />
**[[5d8p]] - PaBFR + Fe<br />
**[[5d8y]], [[4toh]], [[4toe]], [[4toc]], [[4toa]] - PaBFR (mutant) + Fe<br />
**[[5d8y]], [[4toh]], [[4toe]], [[4toc]], [[4toa]] - PaBFR (mutant) + Fe<br />
-
**[[6nli]], [[6nlk]], [[6nll]], [[6nlm]], [[6nln]] - PaBFR + inhibitor<br />
+
**[[6nli]], [[6nlk]], [[6nll]], [[6nlm]], [[6nln]], [[6nlj]] - PaBFR + inhibitor<br />
**[[6nlg]] - PaBFR (mutant) + inhibitor<br />
**[[6nlg]] - PaBFR (mutant) + inhibitor<br />
**[[4E6K]] - PaBFR + BFR-associated protein<br />
**[[4E6K]] - PaBFR + BFR-associated protein<br />
**[[1bfr]], [[1bcf]], [[2htn]], [[2vxi]], [[3e1j]], [[3e1l]], [[3e1m]], [[3e1n]], [[3e1p]], [[3e1o]], [[3e1q]], [[2y3q]] – EcBFR <br />
**[[1bfr]], [[1bcf]], [[2htn]], [[2vxi]], [[3e1j]], [[3e1l]], [[3e1m]], [[3e1n]], [[3e1p]], [[3e1o]], [[3e1q]], [[2y3q]] – EcBFR <br />
**[[4xku]], [[4xkt]], [[4xks]], [[4u3g]] - EcBFR (mutant) <br />
**[[4xku]], [[4xkt]], [[4xks]], [[4u3g]] - EcBFR (mutant) <br />
 +
**[[6p8k]], [[6p8l]] – EcBFR + Zn<br />
**[[3e2c]], [[4cvr]], [[4cvt]] – EcBFR (mutant) + Zn<br />
**[[3e2c]], [[4cvr]], [[4cvt]] – EcBFR (mutant) + Zn<br />
**[[4cvp]], [[3ghq]] - EcBFR (mutant) + Fe<br />
**[[4cvp]], [[3ghq]] - EcBFR (mutant) + Fe<br />
Line 156: Line 171:
**[[2vzb]] – TFR – ''Bacterioides fragilis''
**[[2vzb]] – TFR – ''Bacterioides fragilis''
-
*DNA-binding Protein of Starved cells (Dps)
+
*DNA-binding Protein of Starved cells (Dps) or DNA-binding stress response protein
**[[3iq1]] – VcDps <br />
**[[3iq1]] – VcDps <br />
Line 162: Line 177:
**[[2iy4]] – Dps + Fe – ''Listeria monocytogenes''<br />
**[[2iy4]] – Dps + Fe – ''Listeria monocytogenes''<br />
**[[2bkc]], [[2bk6]], [[2bjy]] – LiDps (mutant) <br />
**[[2bkc]], [[2bk6]], [[2bjy]] – LiDps (mutant) <br />
-
**[[6hv1]] – Dps – ''Listeria innocua''<br />
+
**[[6hv1]] – LiDps – ''Listeria innocua''<br />
-
**[[2f7n]] – Dps + Co – ''Deinococcus radiodurans''<br />
+
**[[6hui]], [[6sev]] – LiDps + Zn<br />
 +
**[[6hvq]] – LiDps + La<br />
 +
**[[6hx2]] – LiDps + Co<br />
 +
**[[2f7n]] – DrDps + Co – ''Deinococcus radiodurans''<br />
 +
**[[2c2j]] – DrDps + Fe <br />
 +
**[[2c2f]], [[2c2u]] – DrDps + Fe + Zn<br />
**[[4a25]] - Dps + Mn – ''Kinecoccus radiodurans''<br />
**[[4a25]] - Dps + Mn – ''Kinecoccus radiodurans''<br />
**[[1tjo]], [[1tk6]], [[1tkp]], [[1tko]], [[1moj]] – Dps + Fe – ''Halobacterium salinarum''<br />
**[[1tjo]], [[1tk6]], [[1tkp]], [[1tko]], [[1moj]] – Dps + Fe – ''Halobacterium salinarum''<br />
Line 178: Line 198:
**[[2xkq]] – SsDps + Mn<br />
**[[2xkq]] – SsDps + Mn<br />
**[[2yw6]], [[2yw7]] – MsDps<br />
**[[2yw6]], [[2yw7]] – MsDps<br />
 +
**[[1uvh]] – MsDps + Fe<br />
**[[3ak8]], [[3ak9]] – Dps + Mg – ''Salmonella enterica''<br />
**[[3ak8]], [[3ak9]] – Dps + Mg – ''Salmonella enterica''<br />
**[[1n1q]] – Dps + Fe2O– ''Brevibacillus brevis''<br />
**[[1n1q]] – Dps + Fe2O– ''Brevibacillus brevis''<br />
Line 185: Line 206:
**[[5i4j]] - NpDps + Zn <br />
**[[5i4j]] - NpDps + Zn <br />
**[[5h4h]] - NpDps + Fe <br />
**[[5h4h]] - NpDps + Fe <br />
 +
**[[2d5k]] – Dps – ''Staphylococcus aureus''<br />
*MrgA
*MrgA

Revision as of 10:55, 27 July 2020

3D Structures of Ferritin

Updated on 27-July-2020

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman, Jaime Prilusky

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