This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6r4k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:15, 24 January 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6r4k' size='340' side='right'caption='[[6r4k]], [[Resolution|resolution]] 2.13&Aring;' scene=''>
<StructureSection load='6r4k' size='340' side='right'caption='[[6r4k]], [[Resolution|resolution]] 2.13&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6r4k]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6R4K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6R4K FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6r4k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paenibacillus_polymyxa Paenibacillus polymyxa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6R4K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6R4K FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=JSK:(2~{S},3~{S},4~{R})-2-[[4-[4-[2-[2-(2-azanylidenehydrazinyl)ethoxy]ethoxy]phenyl]-1,2,3-triazol-1-yl]methyl]pyrrolidine-3,4-diol'>JSK</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.13&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=JSK:(2~{S},3~{S},4~{R})-2-[[4-[4-[2-[2-(2-azanylidenehydrazinyl)ethoxy]ethoxy]phenyl]-1,2,3-triazol-1-yl]methyl]pyrrolidine-3,4-diol'>JSK</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6r4k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6r4k OCA], [http://pdbe.org/6r4k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6r4k RCSB], [http://www.ebi.ac.uk/pdbsum/6r4k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6r4k ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6r4k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6r4k OCA], [https://pdbe.org/6r4k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6r4k RCSB], [https://www.ebi.ac.uk/pdbsum/6r4k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6r4k ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BGLA_PAEPO BGLA_PAEPO]] BglA is intracellular and cleaves cellobiose probably through inorganic phosphate mediated hydrolysis.
+
[https://www.uniprot.org/uniprot/BGLA_PAEPO BGLA_PAEPO] BglA is intracellular and cleaves cellobiose probably through inorganic phosphate mediated hydrolysis.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 6r4k" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6r4k" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Beta-glucosidase 3D structures|Beta-glucosidase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Beta-glucosidase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Jimenez-Ortega, E]]
+
[[Category: Paenibacillus polymyxa]]
-
[[Category: Sanz-Aparicio, J]]
+
[[Category: Jimenez-Ortega E]]
-
[[Category: Carbohydrate]]
+
[[Category: Sanz-Aparicio J]]
-
[[Category: Carbohydrate metabolism]]
+
-
[[Category: Complex]]
+
-
[[Category: Glycosidase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Inhibitor]]
+
-
[[Category: Polisaccharide degradation]]
+

Current revision

Structure of beta-glucosidase A from Paenibacillus polymyxa complexed with a monovalent inhibitor

PDB ID 6r4k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools