This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5abe
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
<StructureSection load='5abe' size='340' side='right'caption='[[5abe]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='5abe' size='340' side='right'caption='[[5abe]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5abe]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5abe]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ABE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ABE FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=XQO:2-[(2S,3S,4R,5R)-5-(HYDROXYMETHYL)-3,4-BIS(OXIDANYL)-1-PENTYL-PYRROLIDIN-2-YL]-N-METHYL-ETHANAMIDE'>XQO</scene> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=XQO:2-[(2S,3S,4R,5R)-5-(HYDROXYMETHYL)-3,4-BIS(OXIDANYL)-1-PENTYL-PYRROLIDIN-2-YL]-N-METHYL-ETHANAMIDE'>XQO</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5abe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5abe OCA], [https://pdbe.org/5abe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5abe RCSB], [https://www.ebi.ac.uk/pdbsum/5abe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5abe ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/OGA_BACTN OGA_BACTN] Biological function unknown. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins. |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 19: | Line 18: | ||
</div> | </div> | ||
<div class="pdbe-citations 5abe" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5abe" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[O-GlcNAcase|O-GlcNAcase]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Bacteroides thetaiotaomicron]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Bergeron-Brlek | + | [[Category: Bergeron-Brlek M]] |
| - | [[Category: Britton | + | [[Category: Britton R]] |
| - | [[Category: Cekic | + | [[Category: Cekic N]] |
| - | [[Category: Chan | + | [[Category: Chan S]] |
| - | [[Category: Davies | + | [[Category: Davies GJ]] |
| - | [[Category: Goodwin-Tindall | + | [[Category: Goodwin-Tindall J]] |
| - | [[Category: Roth | + | [[Category: Roth C]] |
| - | [[Category: Shan | + | [[Category: Shan X]] |
| - | [[Category: Varghese | + | [[Category: Varghese V]] |
| - | [[Category: Vocadlo | + | [[Category: Vocadlo DJ]] |
| - | [[Category: Zandberg | + | [[Category: Zandberg WF]] |
| - | + | ||
| - | + | ||
| - | + | ||
Revision as of 04:49, 25 May 2023
Structure of GH84 with ligand
| |||||||||||
