6jqv

From Proteopedia

(Difference between revisions)

Current revision

Crystal structure of Arabidopsis thaliana NRP2

Structural highlights

6jqv is a 2 chain structure with sequence from Arabidopsis thaliana. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 3.42Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

NRP2_ARATH Acts as histone H2A/H2B chaperone in nucleosome assembly, playing a critical role for the correct expression of genes involved in root proliferation and patterning. Required with NRP1 for the maintenance of cell proliferation and differentiation in postembryonic root growth. Involved in both intramolecular and intermolecular somatic homologous recombination.^[1] ^[2] ^[3]

Publication Abstract from PubMed

Nucleosome Assembly Protein (NAP) is a highly conserved family of histone chaperones present in yeast, animals, and plants. Unlike other organisms, plants possess an additional class of proteins in its NAP family, known as the NAP1-related proteins or NRP. Arabidopsis thaliana possesses two NRP isoforms, namely AtNRP1 and AtNRP2, that share 87% sequence identity. Both AtNRP1 and AtNRP2 get expressed in all the plant tissues. Most works in the past, including structural studies, have focused on AtNRP1. We wanted to do a comparative study of the two proteins to find why the plant would have two very similar proteins and whether there is any difference between the two for their structure and function as histone chaperones. Here we report the crystal structure of AtNRP2 and a comparative analysis of its structural architecture with other NAP family proteins. The crystal structure of AtNRP2 shows it to be a homodimer, with its fold similar to that of other structurally characterized NAP family proteins. Although AtNRP1 and AtNRP2 have a similar fold, upon structural superposition, we find an offset in the dimerization helix of the two proteins. We evaluated the stability, oligomerization status, and histone chaperoning properties of the two proteins, for a comparison. The thermal melting experiments suggest that AtNRP2 is more stable than AtNRP1 at higher temperatures. In addition, electrophoretic mobility shift assay and isothermal titration calorimetry experiments suggest histone binding ability of AtNRP2 is higher than that of AtNRP1. Overall, these results provide insights about the specific function and relevance of AtNRP2 in plants through structural and biophysical studies.

Structural Characterization of Arabidopsis thaliana NAP1-Related Protein 2 (AtNRP2) and Comparison with its Homolog AtNRP1.,Kumar A, Kumar Singh A, Chandrakant Bobde R, Vasudevan D Molecules. 2019 Jun 17;24(12). pii: molecules24122258. doi:, 10.3390/molecules24122258. PMID:31213016^[4]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Zhu Y, Dong A, Meyer D, Pichon O, Renou JP, Cao K, Shen WH. Arabidopsis NRP1 and NRP2 encode histone chaperones and are required for maintaining postembryonic root growth. Plant Cell. 2006 Nov;18(11):2879-92. Epub 2006 Nov 22. PMID:17122067 doi:http://dx.doi.org/10.1105/tpc.106.046490
↑ Zhu Y, Dong A, Shen WH. Chromatin remodeling in Arabidopsis root growth. Plant Signal Behav. 2007 May;2(3):160-2. PMID:19704743
↑ Gao J, Zhu Y, Zhou W, Molinier J, Dong A, Shen WH. NAP1 family histone chaperones are required for somatic homologous recombination in Arabidopsis. Plant Cell. 2012 Apr;24(4):1437-47. doi: 10.1105/tpc.112.096792. Epub 2012 Apr, 24. PMID:22534127 doi:http://dx.doi.org/10.1105/tpc.112.096792
↑ Kumar A, Kumar Singh A, Chandrakant Bobde R, Vasudevan D. Structural Characterization of Arabidopsis thaliana NAP1-Related Protein 2 (AtNRP2) and Comparison with its Homolog AtNRP1. Molecules. 2019 Jun 17;24(12). pii: molecules24122258. doi:, 10.3390/molecules24122258. PMID:31213016 doi:http://dx.doi.org/10.3390/molecules24122258

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6jqv"

Categories: Arabidopsis thaliana | Large Structures | Kumar A | Vasudevan D

@@ Line 3: / Line 3: @@
 <StructureSection load='6jqv' size='340' side='right'caption='[[6jqv]], [[Resolution|resolution]] 3.42&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6jqv]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JQV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JQV FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6jqv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JQV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JQV FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jqv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jqv OCA], [http://pdbe.org/6jqv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jqv RCSB], [http://www.ebi.ac.uk/pdbsum/6jqv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jqv ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.42&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jqv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jqv OCA], [https://pdbe.org/6jqv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jqv RCSB], [https://www.ebi.ac.uk/pdbsum/6jqv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jqv ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/NRP2_ARATH NRP2_ARATH]] Acts as histone H2A/H2B chaperone in nucleosome assembly, playing a critical role for the correct expression of genes involved in root proliferation and patterning. Required with NRP1 for the maintenance of cell proliferation and differentiation in postembryonic root growth. Involved in both intramolecular and intermolecular somatic homologous recombination.<ref>PMID:17122067</ref> <ref>PMID:19704743</ref> <ref>PMID:22534127</ref>
+[https://www.uniprot.org/uniprot/NRP2_ARATH NRP2_ARATH] Acts as histone H2A/H2B chaperone in nucleosome assembly, playing a critical role for the correct expression of genes involved in root proliferation and patterning. Required with NRP1 for the maintenance of cell proliferation and differentiation in postembryonic root growth. Involved in both intramolecular and intermolecular somatic homologous recombination.<ref>PMID:17122067</ref> <ref>PMID:19704743</ref> <ref>PMID:22534127</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 21: / Line 22: @@
 __TOC__
 </StructureSection>
+[[Category: Arabidopsis thaliana]]
 [[Category: Large Structures]]
-[[Category: Kumar, A]]
+[[Category: Kumar A]]
-[[Category: Vasudevan, D]]
+[[Category: Vasudevan D]]
-[[Category: Chaperone]]
-[[Category: Nucleosome assembly protein nrp2 nap nrp]]

6jqv

From Proteopedia

Current revision

Crystal structure of Arabidopsis thaliana NRP2

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox