This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ekb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:31, 5 July 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5ekb' size='340' side='right'caption='[[5ekb]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
<StructureSection load='5ekb' size='340' side='right'caption='[[5ekb]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ekb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geoka Geoka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EKB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EKB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ekb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_kaustophilus_HTA426 Geobacillus kaustophilus HTA426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EKB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5EKB FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.074&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4hr0|4hr0]], [[4hr4|4hr4]], [[4hr5|4hr5]], [[4xbv|4xbv]], [[4xbw|4xbw]], [[4xb9|4xb9]], [[5dco|5dco]], [[5dcr|5dcr]], [[5dcs|5dcs]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GK2771 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=235909 GEOKA])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ekb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ekb OCA], [https://pdbe.org/5ekb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ekb RCSB], [https://www.ebi.ac.uk/pdbsum/5ekb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ekb ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonucleoside-diphosphate_reductase Ribonucleoside-diphosphate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.4.1 1.17.4.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ekb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ekb OCA], [http://pdbe.org/5ekb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ekb RCSB], [http://www.ebi.ac.uk/pdbsum/5ekb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ekb ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5KW80_GEOKA Q5KW80_GEOKA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5ekb" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5ekb" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ribonucleotide reductase 3D structures|Ribonucleotide reductase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Geoka]]
+
[[Category: Geobacillus kaustophilus HTA426]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Ribonucleoside-diphosphate reductase]]
+
[[Category: Griese JJ]]
-
[[Category: Griese, J J]]
+
[[Category: Hogbom M]]
-
[[Category: Hogbom, M]]
+
-
[[Category: Diiron cofactor]]
+
-
[[Category: Metalloprotein oxidoreductase]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: R2-like ligand-binding oxidase]]
+
-
[[Category: Ribonucleotide reductase r2 subunit fold]]
+

Current revision

R2-like ligand-binding oxidase with aerobically reconstituted Mn/Fe cofactor (reconstituted in solution)

PDB ID 5ekb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools