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| | <StructureSection load='4dux' size='340' side='right'caption='[[4dux]], [[Resolution|resolution]] 2.30Å' scene=''> | | <StructureSection load='4dux' size='340' side='right'caption='[[4dux]], [[Resolution|resolution]] 2.30Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4dux]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DUX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DUX FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4dux]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DUX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DUX FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0MK:L-RIBOPYRANOSE'>0MK</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0MK:L-RIBOPYRANOSE'>0MK</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4duv|4duv]], [[4duw|4duw]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dux FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dux OCA], [https://pdbe.org/4dux PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dux RCSB], [https://www.ebi.ac.uk/pdbsum/4dux PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dux ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b0344, JW0335, lacZ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
| + | |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-galactosidase Beta-galactosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.23 3.2.1.23] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dux FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dux OCA], [http://pdbe.org/4dux PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dux RCSB], [http://www.ebi.ac.uk/pdbsum/4dux PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dux ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [[https://www.uniprot.org/uniprot/BGAL_ECOLI BGAL_ECOLI]] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Beta-galactosidase]] | + | [[Category: Escherichia coli K-12]] |
| - | [[Category: Ecoli]]
| + | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Dugdale, M L]] | + | [[Category: Dugdale ML]] |
| - | [[Category: Huber, R E]] | + | [[Category: Huber RE]] |
| - | [[Category: Janzcewicz, L J]] | + | [[Category: Janzcewicz LJ]] |
| - | [[Category: Lo, S]] | + | [[Category: Lo S]] |
| - | [[Category: Wheatley, R W]] | + | [[Category: Wheatley RW]] |
| - | [[Category: Allolactose synthesis]]
| + | |
| - | [[Category: Beta supersandwich]]
| + | |
| - | [[Category: Bi-functional enzyme]]
| + | |
| - | [[Category: Glycosidase]]
| + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Immunoglobulin]]
| + | |
| - | [[Category: Jelly-roll barrel]]
| + | |
| Structural highlights
Function
[BGAL_ECOLI]
Publication Abstract from PubMed
beta-Galactosidase (lacZ) has bifunctional activity. It hydrolyzes lactose to galactose and glucose and catalyzes the intramolecular isomerization of lactose to allolactose, the lac operon inducer. beta-Galactosidase promotes the isomerization by means of an acceptor site that binds glucose after its cleavage from lactose and thus delays its exit from the site. However, because of its relatively low affinity for glucose, details of this site have remained elusive. We present structural data mapping the glucose site based on a substituted enzyme (G794A-beta-galactosidase) that traps allolactose. Various lines of evidence indicate that the glucose of the trapped allolactose is in the acceptor position. The evidence includes structures with Bis-Tris (2,2-bis(hydroxymethyl)-2,2',2-nitrilotriethanol) and L-ribose in the site and kinetic binding studies with substituted beta-galactosidases. The site is composed of Asn-102, His-418, Lys-517, Ser-796, Glu-797, and Trp-999. Ser-796 and Glu-797 are part of a loop (residues 795-803) that closes over the active site. This loop appears essential for the bifunctional nature of the enzyme because it helps form the glucose binding site. In addition, because the loop is mobile, glucose binding is transient, allowing the release of some glucose. Bioinformatics studies showed that the residues important for interacting with glucose are only conserved in a subset of related enzymes. Thus, intramolecular isomerization is not a universal feature of beta-galactosidases. Genomic analyses indicated that lac repressors were co-selected only within the conserved subset. This shows that the glucose binding site of beta-galactosidase played an important role in lac operon evolution.
Structural explanation for allolactose (lac operon inducer) synthesis by lacZ beta-galactosidase and the evolutionary relationship between allolactose synthesis and the lac repressor.,Wheatley RW, Lo S, Jancewicz LJ, Dugdale ML, Huber RE J Biol Chem. 2013 May 3;288(18):12993-3005. doi: 10.1074/jbc.M113.455436. Epub, 2013 Mar 13. PMID:23486479[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Wheatley RW, Lo S, Jancewicz LJ, Dugdale ML, Huber RE. Structural explanation for allolactose (lac operon inducer) synthesis by lacZ beta-galactosidase and the evolutionary relationship between allolactose synthesis and the lac repressor. J Biol Chem. 2013 May 3;288(18):12993-3005. doi: 10.1074/jbc.M113.455436. Epub, 2013 Mar 13. PMID:23486479 doi:10.1074/jbc.M113.455436
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