This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5k1k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:18, 20 September 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5k1k' size='340' side='right'caption='[[5k1k]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
<StructureSection load='5k1k' size='340' side='right'caption='[[5k1k]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5k1k]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sheon Sheon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K1K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5K1K FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5k1k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis_MR-1 Shewanella oneidensis MR-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K1K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5K1K FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8K6:OCTADECANE'>8K6</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=HBA:P-HYDROXYBENZALDEHYDE'>HBA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.301&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sye4, SO_3392 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211586 SHEON])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8K6:OCTADECANE'>8K6</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=HBA:P-HYDROXYBENZALDEHYDE'>HBA</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5k1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k1k OCA], [http://pdbe.org/5k1k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5k1k RCSB], [http://www.ebi.ac.uk/pdbsum/5k1k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5k1k ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5k1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k1k OCA], [https://pdbe.org/5k1k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5k1k RCSB], [https://www.ebi.ac.uk/pdbsum/5k1k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5k1k ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8EBV3_SHEON Q8EBV3_SHEON]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 24:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Sheon]]
+
[[Category: Shewanella oneidensis MR-1]]
-
[[Category: Brige, A]]
+
[[Category: Brige A]]
-
[[Category: Elegheert, J]]
+
[[Category: Elegheert J]]
-
[[Category: Savvides, S N]]
+
[[Category: Savvides S-N]]
-
[[Category: Cofactor-binding]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of oxidized Shewanella Yellow Enzyme 4 (SYE4) in complex with p-hydroxybenzaldehyde

PDB ID 5k1k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools