This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6oz6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:20, 11 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6oz6' size='340' side='right'caption='[[6oz6]], [[Resolution|resolution]] 3.70&Aring;' scene=''>
<StructureSection load='6oz6' size='340' side='right'caption='[[6oz6]], [[Resolution|resolution]] 3.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6oz6]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Aquae Aquae] and [http://en.wikipedia.org/wiki/Camelus_glama Camelus glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OZ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6OZ6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6oz6]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5] and [https://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OZ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6OZ6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NKD:(2~{S})-2-[[(2~{S})-1-[[(2~{S},3~{S})-3-[[(2~{S})-2-azanyl-3-(3-hydroxyphenyl)propanoyl]-methyl-amino]-1-[[(~{Z})-[(3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-ylidene]methyl]amino]-1-oxidanylidene-butan-2-yl]amino]-4-methylsulfanyl-1-oxidanylidene-butan-2-yl]carbamoylamino]-3-(3-hydroxyphenyl)propanoic+acid'>NKD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.7&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mraY, aq_053 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224324 AQUAE])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NKD:(2~{S})-2-[[(2~{S})-1-[[(2~{S},3~{S})-3-[[(2~{S})-2-azanyl-3-(3-hydroxyphenyl)propanoyl]-methyl-amino]-1-[[(~{Z})-[(3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-ylidene]methyl]amino]-1-oxidanylidene-butan-2-yl]amino]-4-methylsulfanyl-1-oxidanylidene-butan-2-yl]carbamoylamino]-3-(3-hydroxyphenyl)propanoic+acid'>NKD</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phospho-N-acetylmuramoyl-pentapeptide-transferase Phospho-N-acetylmuramoyl-pentapeptide-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.8.13 2.7.8.13] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6oz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6oz6 OCA], [https://pdbe.org/6oz6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6oz6 RCSB], [https://www.ebi.ac.uk/pdbsum/6oz6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6oz6 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6oz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6oz6 OCA], [http://pdbe.org/6oz6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6oz6 RCSB], [http://www.ebi.ac.uk/pdbsum/6oz6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6oz6 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/MRAY_AQUAE MRAY_AQUAE]] First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (By similarity).
+
[https://www.uniprot.org/uniprot/MRAY_AQUAE MRAY_AQUAE] First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aquae]]
+
[[Category: Aquifex aeolicus VF5]]
-
[[Category: Camelus glama]]
+
[[Category: Lama glama]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Phospho-N-acetylmuramoyl-pentapeptide-transferase]]
+
[[Category: Lee SY]]
-
[[Category: Lee, S Y]]
+
[[Category: Mashalidis EH]]
-
[[Category: Mashalidis, E H]]
+
-
[[Category: Antibiotic target]]
+
-
[[Category: Integral membrane enzyme]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Membrane protein-transferase complex]]
+
-
[[Category: Peptidoglycan biosynthesis]]
+
-
[[Category: Translocase]]
+

Current revision

Crystal structure of MraY bound to 3'-hydroxymureidomycin A

PDB ID 6oz6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6oz6"
Personal tools