6o0b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6o0b is ON HOLD until Paper Publication
+
==Structural and Mechanistic Insights into CO2 Activation by Nitrogenase Iron Protein==
 +
<StructureSection load='6o0b' size='340' side='right'caption='[[6o0b]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[6o0b]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Azovd Azovd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6O0B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6O0B FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nifH, Avin_01380 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=322710 AZOVD])</td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrogenase Nitrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.6.1 1.18.6.1] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6o0b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6o0b OCA], [http://pdbe.org/6o0b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6o0b RCSB], [http://www.ebi.ac.uk/pdbsum/6o0b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6o0b ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/C1DGZ6_AZOVD C1DGZ6_AZOVD]] The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein.[HAMAP-Rule:MF_00533]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The Fe protein of nitrogenase catalyzes the ambient reduction of CO2 when its cluster is present in the all-ferrous, [Fe4 S4 ](0) oxidation state. Here, we report a combined structural and theoretical study that probes the unique reactivity of the all-ferrous Fe protein toward CO2 . Structural comparisons of the Azotobacter vinelandii Fe protein in the [Fe4 S4 ](0) and [Fe4 S4 ](+) states point to a possible asymmetric functionality of a highly conserved Arg pair in CO2 binding and reduction. Density functional theory (DFT) calculations provide further support for the asymmetric coordination of O by the "proximal" Arg and binding of C to a unique Fe atom of the all-ferrous cluster, followed by donation of protons by the proximate guanidinium group of Arg that eventually results in the scission of a C-O bond. These results provide important mechanistic and structural insights into CO2 activation by a surface-exposed, scaffold-held [Fe4 S4 ] cluster.
-
Authors:
+
Structural and Mechanistic Insights into CO2 Activation by Nitrogenase Iron Protein.,Rettberg LA, Stiebritz MT, Kang W, Lee CC, Ribbe MW, Hu Y Chemistry. 2019 Oct 11;25(57):13078-13082. doi: 10.1002/chem.201903387. Epub 2019, Sep 4. PMID:31402524<ref>PMID:31402524</ref>
-
Description:
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
 +
<div class="pdbe-citations 6o0b" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Azovd]]
 +
[[Category: Large Structures]]
 +
[[Category: Nitrogenase]]
 +
[[Category: Hu, Y]]
 +
[[Category: Kang, W]]
 +
[[Category: Lee, C C]]
 +
[[Category: Rettberg, L A]]
 +
[[Category: Ribbe, M W]]
 +
[[Category: Stiebritz, M T]]
 +
[[Category: Iron protein]]
 +
[[Category: Iron-sulfur cluster]]
 +
[[Category: Oxidoreductase]]

Revision as of 09:36, 30 October 2019

Structural and Mechanistic Insights into CO2 Activation by Nitrogenase Iron Protein

PDB ID 6o0b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools