This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5xy4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:17, 22 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5xy4' size='340' side='right'caption='[[5xy4]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='5xy4' size='340' side='right'caption='[[5xy4]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5xy4]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_16463 Atcc 16463]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XY4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XY4 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5xy4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycothermus_thermophilus Mycothermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XY4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XY4 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HDD:CIS-HEME+D+HYDROXYCHLORIN+GAMMA-SPIROLACTONE'>HDD</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase Catalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HDD:CIS-HEME+D+HYDROXYCHLORIN+GAMMA-SPIROLACTONE'>HDD</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xy4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xy4 OCA], [http://pdbe.org/5xy4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xy4 RCSB], [http://www.ebi.ac.uk/pdbsum/5xy4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xy4 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xy4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xy4 OCA], [https://pdbe.org/5xy4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xy4 RCSB], [https://www.ebi.ac.uk/pdbsum/5xy4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xy4 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/M4GGR7_9PEZI M4GGR7_9PEZI]] Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.[RuleBase:RU004142] Serves to protect cells from the toxic effects of hydrogen peroxide.[PIRNR:PIRNR038927]
+
[https://www.uniprot.org/uniprot/M4GGR7_9PEZI M4GGR7_9PEZI] Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.[RuleBase:RU004142] Serves to protect cells from the toxic effects of hydrogen peroxide.[PIRNR:PIRNR038927]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 26: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 16463]]
 
-
[[Category: Catalase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Balci, S]]
+
[[Category: Mycothermus thermophilus]]
-
[[Category: Goc, G]]
+
[[Category: Balci S]]
-
[[Category: Karakus, Y Yuzugullu]]
+
[[Category: Goc G]]
-
[[Category: Pearson, A R]]
+
[[Category: Pearson AR]]
-
[[Category: Yorke, B]]
+
[[Category: Yorke B]]
-
[[Category: Lateral channel]]
+
[[Category: Yuzugullu Karakus Y]]
-
[[Category: Mutant]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Phenol oxidase]]
+

Current revision

CATPO mutant - V536W

PDB ID 5xy4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5xy4"
Personal tools