This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6oq5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:15, 11 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6oq5' size='340' side='right'caption='[[6oq5]], [[Resolution|resolution]] 3.87&Aring;' scene=''>
<StructureSection load='6oq5' size='340' side='right'caption='[[6oq5]], [[Resolution|resolution]] 3.87&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6oq5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_difficilis"_hall_and_o'toole_1935 "bacillus difficilis" hall and o'toole 1935] and [http://en.wikipedia.org/wiki/Camelidae Camelidae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OQ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6OQ5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6oq5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Camelidae Camelidae] and [https://en.wikipedia.org/wiki/Clostridioides_difficile Clostridioides difficile]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6OQ5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.87&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tcdB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1496 "Bacillus difficilis" Hall and O'Toole 1935])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6oq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6oq5 OCA], [http://pdbe.org/6oq5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6oq5 RCSB], [http://www.ebi.ac.uk/pdbsum/6oq5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6oq5 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6oq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6oq5 OCA], [https://pdbe.org/6oq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6oq5 RCSB], [https://www.ebi.ac.uk/pdbsum/6oq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6oq5 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/M4NKV9_CLODI M4NKV9_CLODI]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 19:
</div>
</div>
<div class="pdbe-citations 6oq5" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 6oq5" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Antibody 3D structures|Antibody 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus difficilis hall and o'toole 1935]]
 
[[Category: Camelidae]]
[[Category: Camelidae]]
 +
[[Category: Clostridioides difficile]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Chen, P]]
+
[[Category: Chen P]]
-
[[Category: Jin, R]]
+
[[Category: Jin R]]
-
[[Category: Lam, K]]
+
[[Category: Lam K]]
-
[[Category: Toxin]]
+
-
[[Category: Toxin vhh]]
+

Current revision

Structure of the full-length Clostridium difficile toxin B in complex with 3 VHHs

PDB ID 6oq5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools