This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ov5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:25, 28 December 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5ov5' size='340' side='right'caption='[[5ov5]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
<StructureSection load='5ov5' size='340' side='right'caption='[[5ov5]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ov5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_14581 Atcc 14581]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OV5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OV5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ov5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Priestia_megaterium Priestia megaterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OV5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5OV5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DPM:3-[5-{[3-(2-CARBOXYETHYL)-4-(CARBOXYMETHYL)-5-METHYL-1H-PYRROL-2-YL]METHYL}-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL]PROPANOIC+ACID'>DPM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.81&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4mlv|4mlv]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DPM:3-[5-{[3-(2-CARBOXYETHYL)-4-(CARBOXYMETHYL)-5-METHYL-1H-PYRROL-2-YL]METHYL}-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL]PROPANOIC+ACID'>DPM</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hemC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1404 ATCC 14581])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ov5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ov5 OCA], [https://pdbe.org/5ov5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ov5 RCSB], [https://www.ebi.ac.uk/pdbsum/5ov5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ov5 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydroxymethylbilane_synthase Hydroxymethylbilane synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.61 2.5.1.61] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ov5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ov5 OCA], [http://pdbe.org/5ov5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ov5 RCSB], [http://www.ebi.ac.uk/pdbsum/5ov5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ov5 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/Q8GCA8_BACME Q8GCA8_BACME]] Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps (By similarity).[HAMAP-Rule:MF_00260][SAAS:SAAS022418_004_010364]
+
[https://www.uniprot.org/uniprot/Q8GCA8_PRIMG Q8GCA8_PRIMG] Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.[ARBA:ARBA00002869][HAMAP-Rule:MF_00260]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 28: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 14581]]
 
-
[[Category: Hydroxymethylbilane synthase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Coker, A R]]
+
[[Category: Priestia megaterium]]
-
[[Category: Cooper, J B]]
+
[[Category: Coker AR]]
-
[[Category: Erskine, P]]
+
[[Category: Cooper JB]]
-
[[Category: Guo, J]]
+
[[Category: Erskine P]]
-
[[Category: Wood, S P]]
+
[[Category: Guo J]]
-
[[Category: Cofactor]]
+
[[Category: Wood SP]]
-
[[Category: Deaminase]]
+
-
[[Category: Domain movement]]
+
-
[[Category: Mutation]]
+
-
[[Category: Transferase]]
+

Current revision

Bacillus megaterium porphobilinogen deaminase D82E mutant

PDB ID 5ov5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5ov5"
Personal tools