This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6hdd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='6hdd' size='340' side='right'caption='[[6hdd]], [[Resolution|resolution]] 4.50&Aring;' scene=''>
<StructureSection load='6hdd' size='340' side='right'caption='[[6hdd]], [[Resolution|resolution]] 4.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6hdd]] is a 7 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HDD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HDD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6hdd]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens_bacteriophage_obp Pseudomonas fluorescens bacteriophage obp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HDD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HDD FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6hdd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hdd OCA], [http://pdbe.org/6hdd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hdd RCSB], [http://www.ebi.ac.uk/pdbsum/6hdd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hdd ProSAT]</span></td></tr>
+
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">OBP_246 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1124849 Pseudomonas fluorescens bacteriophage OBP])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6hdd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hdd OCA], [http://pdbe.org/6hdd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hdd RCSB], [http://www.ebi.ac.uk/pdbsum/6hdd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hdd ProSAT]</span></td></tr>
</table>
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Chaperonins are ubiquitously present protein complexes, which assist the proper folding of newly synthesized proteins and prevent aggregation of denatured proteins in an ATP-dependent manner. They are classified into group I (bacterial, mitochondrial, chloroplast chaperonins) and group II (archaeal and eukaryotic cytosolic variants). However, both of these groups do not include recently discovered viral chaperonins. Here, we solved the symmetry-free cryo-EM structures of a single-ring chaperonin encoded by the gene 246 of bacteriophage OBP Pseudomonas fluorescens, in the nucleotide-free, ATPgammaS-, and ADP-bound states, with a resolution of 4.3A, 5.0A, and 6A, respectively. The structure of OBP chaperonin reveals a unique subunit arrangement, with three subunits pairs and one unpaired subunit. Each pair combines subunits in two possible conformations, differing in nucleotide-binding affinity. Binding of nucleotides result in the increase of subunits' conformational variability. Due to its unique structural and functional features, OBP chaperonin can represent a new group. 148 words.
 +
 +
Cryo-EM reveals an asymmetry in a novel single-ring viral chaperonin.,Stanishneva-Konovalova TB, Semenyuk PI, Kurochkina LP, Pichkur EB, Vasilyev AL, Kovalchuk MV, Kirpichnikov MP, Sokolova OS J Struct Biol. 2019 Dec 20:107439. doi: 10.1016/j.jsb.2019.107439. PMID:31870903<ref>PMID:31870903</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6hdd" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
 +
[[Category: Pseudomonas fluorescens bacteriophage obp]]
[[Category: Semenyuk, P I]]
[[Category: Semenyuk, P I]]
[[Category: Sokolova, O S]]
[[Category: Sokolova, O S]]

Revision as of 08:59, 8 January 2020

OBP chaperonin in the nucleotide-free state

PDB ID 6hdd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools