This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5nfg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:53, 15 November 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5nfg' size='340' side='right'caption='[[5nfg]], [[Resolution|resolution]] 2.38&Aring;' scene=''>
<StructureSection load='5nfg' size='340' side='right'caption='[[5nfg]], [[Resolution|resolution]] 2.38&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5nfg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cynca Cynca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NFG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NFG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5nfg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cynara_cardunculus Cynara cardunculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NFG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NFG FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.375&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cardB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4265 CYNCA])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nfg OCA], [http://pdbe.org/5nfg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nfg RCSB], [http://www.ebi.ac.uk/pdbsum/5nfg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nfg ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nfg OCA], [https://pdbe.org/5nfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nfg RCSB], [https://www.ebi.ac.uk/pdbsum/5nfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nfg ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CARDB_CYNCA CARDB_CYNCA]] Aspartic protease. Cleaves alpha-lactalbumin but not beta-lactoglobulin.<ref>PMID:16428617</ref> <ref>PMID:8654427</ref>
+
[https://www.uniprot.org/uniprot/CARDB_CYNCA CARDB_CYNCA] Aspartic protease. Cleaves alpha-lactalbumin but not beta-lactoglobulin.<ref>PMID:16428617</ref> <ref>PMID:8654427</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cynca]]
+
[[Category: Cynara cardunculus]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Almeida, C M]]
+
[[Category: Almeida CM]]
-
[[Category: Figueiredo, A C]]
+
[[Category: Figueiredo AC]]
-
[[Category: Manso, J A]]
+
[[Category: Manso JA]]
-
[[Category: Pereira, P J.B]]
+
[[Category: Pereira PJB]]
-
[[Category: Simoes, I]]
+
[[Category: Simoes I]]
-
[[Category: Hydrolase]]
+
-
[[Category: Plant aspartic protease]]
+

Current revision

Structure of recombinant cardosin B from Cynara cardunculus

PDB ID 5nfg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools