6dfl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:32, 6 November 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6dfl' size='340' side='right'caption='[[6dfl]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='6dfl' size='340' side='right'caption='[[6dfl]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6dfl]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885] and [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DFL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DFL FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6dfl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DFL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DFL FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=G9S:S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]+hexadecanethioate'>G9S</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.396&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=G9S:~{S}-[2-[3-[[(2~{S})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl]+hexadecanethioate'>G9S</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rfaP, waaP, PA5009 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885]), acpP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dfl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dfl OCA], [https://pdbe.org/6dfl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dfl RCSB], [https://www.ebi.ac.uk/pdbsum/6dfl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dfl ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dfl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dfl OCA], [http://pdbe.org/6dfl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dfl RCSB], [http://www.ebi.ac.uk/pdbsum/6dfl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dfl ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RFAP_PSEAE RFAP_PSEAE]] Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core. The phosphorylation of the lipopolysaccharide core seems to occur prior to translocation to the periplasm and attachment of O-antigen. Also has protein-tyrosine kinase activity: autophosphorylates on all Tyr residues; in vitro can phosphorylate poly(Glu,Tyr).<ref>PMID:11741974</ref> [[http://www.uniprot.org/uniprot/ACP_ECO45 ACP_ECO45]] Carrier of the growing fatty acid chain in fatty acid biosynthesis.[HAMAP-Rule:MF_01217]
+
[https://www.uniprot.org/uniprot/WAAP_PSEAE WAAP_PSEAE] Kinase involved in the biosynthesis of the core oligosaccharide region of lipopolysaccharide (LPS) (PubMed:11741974, PubMed:21810964, PubMed:30237436). Catalyzes the phosphorylation of heptose I (HepI), the first heptose added to the Kdo2-lipid A module (PubMed:11741974). Also has protein-tyrosine kinase activity: autophosphorylates on all Tyr residues; in vitro can phosphorylate poly(Glu,Tyr) (PubMed:11741974).<ref>PMID:11741974</ref> <ref>PMID:21810964</ref> <ref>PMID:30237436</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Chopra, R]]
+
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Vash, B]]
+
[[Category: Chopra R]]
-
[[Category: Bacterial sugar kinase]]
+
[[Category: Vash B]]
-
[[Category: Hydrolase]]
+

Current revision

WaaP in complex with acyl carrier protein

PDB ID 6dfl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6dfl"
Personal tools