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6qgr

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Current revision (12:00, 24 January 2024) (edit) (undo)
 
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<StructureSection load='6qgr' size='340' side='right'caption='[[6qgr]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
<StructureSection load='6qgr' size='340' side='right'caption='[[6qgr]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6qgr]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_barkeri_ms Methanosarcina barkeri ms]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QGR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QGR FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6qgr]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanosarcina_barkeri_MS Methanosarcina barkeri MS]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QGR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QGR FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=BU3:(R,R)-2,3-BUTANEDIOL'>BU3</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NFU:FORMYL[BIS(HYDROCYANATO-1KAPPAC)]IRONNICKEL(FE-NI)'>NFU</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.839&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Coenzyme_F420_hydrogenase Coenzyme F420 hydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.12.98.1 1.12.98.1] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=144:TRIS-HYDROXYMETHYL-METHYL-AMMONIUM'>144</scene>, <scene name='pdbligand=BU3:(R,R)-2,3-BUTANEDIOL'>BU3</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NFU:FORMYL[BIS(HYDROCYANATO-1KAPPAC)]IRONNICKEL(FE-NI)'>NFU</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qgr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qgr OCA], [http://pdbe.org/6qgr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qgr RCSB], [http://www.ebi.ac.uk/pdbsum/6qgr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qgr ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qgr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qgr OCA], [https://pdbe.org/6qgr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qgr RCSB], [https://www.ebi.ac.uk/pdbsum/6qgr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qgr ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A0E3LP72_METBA A0A0E3LP72_METBA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Coenzyme F420 hydrogenase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Methanosarcina barkeri ms]]
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[[Category: Methanosarcina barkeri MS]]
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[[Category: Dobbek, H]]
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[[Category: Dobbek H]]
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[[Category: Horch, M]]
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[[Category: Horch M]]
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[[Category: Ilina, Y]]
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[[Category: Ilina Y]]
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[[Category: Jeoung, J H]]
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[[Category: Jeoung JH]]
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[[Category: Katz, S]]
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[[Category: Katz S]]
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[[Category: Lorent, C]]
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[[Category: Lorent C]]
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[[Category: Shima, S]]
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[[Category: Shima S]]
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[[Category: Zebger, I]]
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[[Category: Zebger I]]
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[[Category: Metal binding protein]]
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[[Category: Methanogenic acetoclastic archaea]]
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[[Category: Oxidoreductase]]
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[[Category: Oxygen sensitive]]
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[[Category: Reversible oxidation of dihydrogen]]
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Current revision

The F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri at the Nia-S state

PDB ID 6qgr

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