6ulx
From Proteopedia
(Difference between revisions)
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| - | '''Unreleased structure''' | ||
| - | + | ==Adenylation domain of a keto acid-selecting NRPS module bound to keto acyl adenylate space group P43212== | |
| + | <StructureSection load='6ulx' size='340' side='right'caption='[[6ulx]], [[Resolution|resolution]] 2.31Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6ulx]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ULX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ULX FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=QA7:5-O-{(S)-hydroxy[(4-methyl-2-oxopentanoyl)oxy]phosphoryl}adenosine'>QA7</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ulx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ulx OCA], [http://pdbe.org/6ulx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ulx RCSB], [http://www.ebi.ac.uk/pdbsum/6ulx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ulx ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | phenix.refine is a program within the PHENIX package that supports crystallographic structure refinement against experimental data with a wide range of upper resolution limits using a large repertoire of model parameterizations. It has several automation features and is also highly flexible. Several hundred parameters enable extensive customizations for complex use cases. Multiple user-defined refinement strategies can be applied to specific parts of the model in a single refinement run. An intuitive graphical user interface is available to guide novice users and to assist advanced users in managing refinement projects. X-ray or neutron diffraction data can be used separately or jointly in refinement. phenix.refine is tightly integrated into the PHENIX suite, where it serves as a critical component in automated model building, final structure refinement, structure validation and deposition to the wwPDB. This paper presents an overview of the major phenix.refine features, with extensive literature references for readers interested in more detailed discussions of the methods. | ||
| - | + | Towards automated crystallographic structure refinement with phenix.refine.,Afonine PV, Grosse-Kunstleve RW, Echols N, Headd JJ, Moriarty NW, Mustyakimov M, Terwilliger TC, Urzhumtsev A, Zwart PH, Adams PD Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):352-67. doi:, 10.1107/S0907444912001308. Epub 2012 Mar 16. PMID:22505256<ref>PMID:22505256</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| + | <div class="pdbe-citations 6ulx" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Alonzo, D A]] | ||
| + | [[Category: Chiche-Lapierre, C]] | ||
| + | [[Category: Schmeing, T M]] | ||
| + | [[Category: Adenylate]] | ||
| + | [[Category: Adenylation]] | ||
| + | [[Category: Adenylation domain]] | ||
| + | [[Category: Biosynthetic protein]] | ||
| + | [[Category: Cereulide]] | ||
| + | [[Category: Depsipeptide]] | ||
| + | [[Category: Keto acid]] | ||
| + | [[Category: Ketoacid]] | ||
| + | [[Category: Natural product]] | ||
| + | [[Category: Non-ribosomal peptide synthetase]] | ||
| + | [[Category: Nonribosomal peptide synthetase]] | ||
| + | [[Category: Nrp]] | ||
| + | [[Category: Valinomycin]] | ||
Revision as of 06:42, 19 February 2020
Adenylation domain of a keto acid-selecting NRPS module bound to keto acyl adenylate space group P43212
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Categories: Large Structures | Alonzo, D A | Chiche-Lapierre, C | Schmeing, T M | Adenylate | Adenylation | Adenylation domain | Biosynthetic protein | Cereulide | Depsipeptide | Keto acid | Ketoacid | Natural product | Non-ribosomal peptide synthetase | Nonribosomal peptide synthetase | Nrp | Valinomycin
