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Nitrite reductase 3D structures
From Proteopedia
(Difference between revisions)
(New page: ==3D structures of nitrite reductase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *'''Cu-containing nitrite re...) |
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**[[1nia]], [[1nib]], [[1nic]], [[1nid]], [[1nie]], [[1nif]], [[2nrd]], [[1kcb]], [[1rzp]], [[1rzq]], [[2bw4]], [[2bw5]], [[2avf]], [[5l6k]], [[5i6l]], [[5l6m]], [[5i6n]], [[5l6o]], [[5i6p]], [[5n8f]], [[5n8g]], [[5n8h]], [[5n8i]], [[6gsq]], [[6gt2]], [[6gtj]] – AcNIR + Cu – ''Achromobacter cycloclastes''<br /> | **[[1nia]], [[1nib]], [[1nic]], [[1nid]], [[1nie]], [[1nif]], [[2nrd]], [[1kcb]], [[1rzp]], [[1rzq]], [[2bw4]], [[2bw5]], [[2avf]], [[5l6k]], [[5i6l]], [[5l6m]], [[5i6n]], [[5l6o]], [[5i6p]], [[5n8f]], [[5n8g]], [[5n8h]], [[5n8i]], [[6gsq]], [[6gt2]], [[6gtj]] – AcNIR + Cu – ''Achromobacter cycloclastes''<br /> | ||
| + | **[[6knf]], [[6kng]] – AcNIR + Cu – Cryo EM<br /> | ||
**[[2afn]], [[1aq8]], [[1as7]], [[2fjs]], [[2pp7]], [[2pp8]], [[3h4h]], [[3h56]], [[4ysc]], [[4yse]], [[5d4h]], [[5d4i]], [[5d4j]], [[5f7a]], [[5f7b]] - AfNIR + Cu – ''Alcaligenes faecalis''<br /> | **[[2afn]], [[1aq8]], [[1as7]], [[2fjs]], [[2pp7]], [[2pp8]], [[3h4h]], [[3h56]], [[4ysc]], [[4yse]], [[5d4h]], [[5d4i]], [[5d4j]], [[5f7a]], [[5f7b]] - AfNIR + Cu – ''Alcaligenes faecalis''<br /> | ||
**[[1ntd]], [[1npj]], [[1npn]], [[1zdq]], [[3h4f]] - AfNIR (mutant) + Cu<br /> | **[[1ntd]], [[1npj]], [[1npn]], [[1zdq]], [[3h4f]] - AfNIR (mutant) + Cu<br /> | ||
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**[[1oe2]], [[2jfc]] - AxNIR (mutant) + Cu<br /> | **[[1oe2]], [[2jfc]] - AxNIR (mutant) + Cu<br /> | ||
**[[1mzz]], [[2dy2]] - RsNIR + Cu – ''Rhodobacter sphaeroides''<br /> | **[[1mzz]], [[2dy2]] - RsNIR + Cu – ''Rhodobacter sphaeroides''<br /> | ||
| - | **[[2dv6]] - | + | **[[2dv6]], [[6tfo]] - HdNIR + Cu – ''Hyphomicrobium denitrificans''<br /> |
**[[3wia]] - GkNIR + Cu – ''Geobacillus kaustophilus''<br /> | **[[3wia]] - GkNIR + Cu – ''Geobacillus kaustophilus''<br /> | ||
**[[3wkq]], [[3x1e]], [[4ysa]], [[4ysd]], [[4yso]], [[4ysp]], [[4ysq]], [[4ysr]], [[4yss]], [[4yst]], [[4ysu]], [[4zk8]], [[5ytl]] - GtNIR + Cu - ''Geobacillus thermodentntrificans''<br /> | **[[3wkq]], [[3x1e]], [[4ysa]], [[4ysd]], [[4yso]], [[4ysp]], [[4ysq]], [[4ysr]], [[4yss]], [[4yst]], [[4ysu]], [[4zk8]], [[5ytl]] - GtNIR + Cu - ''Geobacillus thermodentntrificans''<br /> | ||
| - | **[[3x1f]], [[3x1g]] - GtNIR (mutant) + Cu <br /> | + | **[[3x1f]], [[3x1g]], [[5ytm]] - GtNIR (mutant) + Cu <br /> |
**[[5tb7]], [[5ue6]] - NIR + Cu – ''Neisseria gonorrhoeae''<br /> | **[[5tb7]], [[5ue6]] - NIR + Cu – ''Neisseria gonorrhoeae''<br /> | ||
**[[6hbe]] - NIR + Cu – ''Thermus scotoductus''<br /> | **[[6hbe]] - NIR + Cu – ''Thermus scotoductus''<br /> | ||
**[[6qpu]] – RpNIR + Cu – ''Ralstonia pickettii''<br /> | **[[6qpu]] – RpNIR + Cu – ''Ralstonia pickettii''<br /> | ||
| + | **[[6thf]] – BrNIR + Cu – ''Bradyrhizobium''<br /> | ||
*Cu-containing nitrite reductase with variety of metals | *Cu-containing nitrite reductase with variety of metals | ||
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**[[3wi9]] - GkNIR + Zn + Cu <br /> | **[[3wi9]] - GkNIR + Zn + Cu <br /> | ||
**[[5onx]], [[5ony]] - NIR + Zn + Cu – ''Alcaligenes xylosoxydans''<br /> | **[[5onx]], [[5ony]] - NIR + Zn + Cu – ''Alcaligenes xylosoxydans''<br /> | ||
| + | **[[6the]] – BrNIR + Cu + Yt + Tb <br /> | ||
| + | **[[4csp]] - AcNIR (mutant) + Zn + Cu <br /> | ||
*Cu-containing nitrite reductase binary complex | *Cu-containing nitrite reductase binary complex | ||
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**[[2bwd]], [[2bwi]], [[5og2]], [[5og3]], [[5og4]], [[5og5]], [[5og6]], [[5ogf]], [[5ogg]], [[5of5]], [[5of6]], [[5of7]], [[5of8]], [[5ofc]], [[5ofd]], [[5ofe]], [[5off]], [[5ofg]], [[5ofh]], [[5i6k]], [[5i6m]], [[5i6o]], [[5akr]], [[6gb8]], [[6gbb]], [[6gby]], [[6gcg]], [[6gt0]], [[6gti]], [[6gtk]], [[6gtl]], [[6gtn]] - AcNIR + NO2 + Cu<br /> | **[[2bwd]], [[2bwi]], [[5og2]], [[5og3]], [[5og4]], [[5og5]], [[5og6]], [[5ogf]], [[5ogg]], [[5of5]], [[5of6]], [[5of7]], [[5of8]], [[5ofc]], [[5ofd]], [[5ofe]], [[5off]], [[5ofg]], [[5ofh]], [[5i6k]], [[5i6m]], [[5i6o]], [[5akr]], [[6gb8]], [[6gbb]], [[6gby]], [[6gcg]], [[6gt0]], [[6gti]], [[6gtk]], [[6gtl]], [[6gtn]] - AcNIR + NO2 + Cu<br /> | ||
**[[4csz]] - AcNIR (mutant) + NO2 + Cu <br /> | **[[4csz]] - AcNIR (mutant) + NO2 + Cu <br /> | ||
| - | **[[4csp]] - AcNIR (mutant) + Zn + Cu <br /> | ||
**[[2y1a]] - AcNIR + NO + Cu<br /> | **[[2y1a]] - AcNIR + NO + Cu<br /> | ||
**[[2dws]], [[2dwt]] - RsNIR + NO2 + Cu<br /> | **[[2dws]], [[2dwt]] - RsNIR + NO2 + Cu<br /> | ||
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**[[1aof]], [[1qks]], [[1hj4]], [[1hj5]], [[1h9x]], [[1hcm]] - PpNIR – ''Paracoccus pantotrophus''<br /> | **[[1aof]], [[1qks]], [[1hj4]], [[1hj5]], [[1h9x]], [[1hcm]] - PpNIR – ''Paracoccus pantotrophus''<br /> | ||
**[[1gq1]] - PpNIR (mutant)<br /> | **[[1gq1]] - PpNIR (mutant)<br /> | ||
| - | **[[1nir]], [[1bl9]], [[1n15]], [[1n50]], [[1n90]] – PaNIR – ''Pseudomonas aeruginosa''<br /> | + | **[[1nir]], [[1bl9]], [[1n15]], [[1n50]], [[1n90]], [[6rtd]], [[6rte]] – PaNIR – ''Pseudomonas aeruginosa''<br /> |
**[[1hzu]] - PaNIR (mutant)<br /> | **[[1hzu]] - PaNIR (mutant)<br /> | ||
**[[1qdb]] - NIR – ''Sulfurospirillum deleyianum''<br /> | **[[1qdb]] - NIR – ''Sulfurospirillum deleyianum''<br /> | ||
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**[[2fwl]] – TtNIR + NIR oxidase subunit II <BR /> | **[[2fwl]] – TtNIR + NIR oxidase subunit II <BR /> | ||
**[[1cno]] – NIR – ''Pseudomonas nautica''<br /> | **[[1cno]] – NIR – ''Pseudomonas nautica''<br /> | ||
| - | **[[3ubr]] – SoNIR – ''Shewanella oneidensis''<br /> | + | **[[3ubr]], [[6p73]] – SoNIR – ''Shewanella oneidensis''<br /> |
**[[3sqx]] – TpNIR – ''Thioalkalivibrio paradoxus''<br /> | **[[3sqx]] – TpNIR – ''Thioalkalivibrio paradoxus''<br /> | ||
| + | **[[6v0a]] – NIR – ''Geobacter lovleyi''<br /> | ||
*Heme-containing nitrite reductase binary complex | *Heme-containing nitrite reductase binary complex | ||
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**[[2e80]] - WsNIR + NO2<br /> | **[[2e80]] - WsNIR + NO2<br /> | ||
**[[3bnh]] - WsNIR (mutant) + NO<br /> | **[[3bnh]] - WsNIR (mutant) + NO<br /> | ||
| - | **[[3d1i]], [[3rkh]], [[3owm]], [[4l38]], [[4l3x]], [[4l3y]], [[4l3z]] - TnNIR + NO2 | + | **[[3d1i]], [[3rkh]], [[3owm]], [[4l38]], [[4l3x]], [[4l3y]], [[4l3z]] - TnNIR + NO2<br /> |
| + | ** [[6qwg]] - AcNIR + Cu + NO2<br /> | ||
| + | ** [[6tfd]] - HdNIR + Cu + NO2<br /> | ||
*Heme-containing nitrite reductase binary complex with azide | *Heme-containing nitrite reductase binary complex with azide | ||
Revision as of 09:59, 13 September 2020
3D structures of nitrite reductase
Updated on 13-September-2020
