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| | <StructureSection load='1n5w' size='340' side='right'caption='[[1n5w]], [[Resolution|resolution]] 1.50Å' scene=''> | | <StructureSection load='1n5w' size='340' side='right'caption='[[1n5w]], [[Resolution|resolution]] 1.50Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[1n5w]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Oligotropha_carboxidovorans Oligotropha carboxidovorans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1qj2 1qj2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N5W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N5W FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1n5w]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Oligotropha_carboxidovorans Oligotropha carboxidovorans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1qj2 1qj2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N5W FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CUM:CU(I)-S-MO(VI)(=O)OH+CLUSTER'>CUM</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MCN:PTERIN+CYTOSINE+DINUCLEOTIDE'>MCN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CUM:CU(I)-S-MO(VI)(=O)OH+CLUSTER'>CUM</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MCN:PTERIN+CYTOSINE+DINUCLEOTIDE'>MCN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1n60|1n60]], [[1n61|1n61]], [[1n62|1n62]], [[1n63|1n63]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1n60|1n60]], [[1n61|1n61]], [[1n62|1n62]], [[1n63|1n63]]</div></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Carbon-monoxide_dehydrogenase_(acceptor) Carbon-monoxide dehydrogenase (acceptor)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.99.2 1.2.99.2] </span></td></tr> | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Carbon-monoxide_dehydrogenase_(acceptor) Carbon-monoxide dehydrogenase (acceptor)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.99.2 1.2.99.2] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n5w OCA], [http://pdbe.org/1n5w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1n5w RCSB], [http://www.ebi.ac.uk/pdbsum/1n5w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1n5w ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n5w OCA], [https://pdbe.org/1n5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n5w RCSB], [https://www.ebi.ac.uk/pdbsum/1n5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n5w ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/DCMS_OLICO DCMS_OLICO]] Catalyzes the oxidation of carbon monoxide to carbon dioxide. [[http://www.uniprot.org/uniprot/DCMM_OLICO DCMM_OLICO]] Catalyzes the oxidation of carbon monoxide to carbon dioxide. [[http://www.uniprot.org/uniprot/DCML_OLICO DCML_OLICO]] Catalyzes the oxidation of carbon monoxide to carbon dioxide. | + | [[https://www.uniprot.org/uniprot/DCMS_OLICO DCMS_OLICO]] Catalyzes the oxidation of carbon monoxide to carbon dioxide. [[https://www.uniprot.org/uniprot/DCMM_OLICO DCMM_OLICO]] Catalyzes the oxidation of carbon monoxide to carbon dioxide. [[https://www.uniprot.org/uniprot/DCML_OLICO DCML_OLICO]] Catalyzes the oxidation of carbon monoxide to carbon dioxide. |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
| Structural highlights
1n5w is a 6 chain structure with sequence from Oligotropha carboxidovorans. This structure supersedes the now removed PDB entry 1qj2. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| | Ligands: | , , , , |
| Related: | |
| Activity: | Carbon-monoxide dehydrogenase (acceptor), with EC number 1.2.99.2 |
| Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
[DCMS_OLICO] Catalyzes the oxidation of carbon monoxide to carbon dioxide. [DCMM_OLICO] Catalyzes the oxidation of carbon monoxide to carbon dioxide. [DCML_OLICO] Catalyzes the oxidation of carbon monoxide to carbon dioxide.
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
The CO dehydrogenase of the eubacterium Oligotropha carboxidovorans is a 277-kDa Mo- and Cu-containing iron-sulfur flavoprotein. Here, the enzyme's active site in the oxidized or reduced state, after inactivation with potassium cyanide or with n-butylisocyanide bound to the active site, has been reinvestigated by multiple wavelength anomalous dispersion measurements at atomic resolution, electron spin resonance spectroscopy, and chemical analyses. We present evidence for a dinuclear heterometal [CuSMoO)OH] cluster in the active site of the oxidized or reduced enzyme, which is prone to cyanolysis. The cluster is coordinated through interactions of the Mo with the dithiolate pyran ring of molybdopterin cytosine dinucleotide and of the Cu with the Sgamma of Cys-388, which is part of the active-site loop VAYRC(388)SFR. The previously reported active-site structure [Dobbek, H., Gremer, L., Meyer, O. & Huber, R. (1999) Proc. Natl. Acad. Sci. USA 96, 8884-8889] of an Mo with three oxygen ligands and an SeH-group bound to the Sgamma atom of Cys-388 could not be confirmed. The structure of CO dehydrogenase with the inhibitor n-butylisocyanide bound has led to a model for the catalytic mechanism of CO oxidation which involves a thiocarbonate-like intermediate state. The dinuclear [CuSMo(O)OH] cluster of CO dehydrogenase establishes a previously uncharacterized class of dinuclear molybdoenzymes containing the pterin cofactor.
Catalysis at a dinuclear [CuSMo(==O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution.,Dobbek H, Gremer L, Kiefersauer R, Huber R, Meyer O Proc Natl Acad Sci U S A. 2002 Dec 10;99(25):15971-6. PMID:12475995[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Dobbek H, Gremer L, Kiefersauer R, Huber R, Meyer O. Catalysis at a dinuclear [CuSMo(==O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution. Proc Natl Acad Sci U S A. 2002 Dec 10;99(25):15971-6. PMID:12475995 doi:10.1073/pnas.212640899
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