1n5z

From Proteopedia

(Difference between revisions)

Revision as of 06:58, 25 August 2021

Complex structure of Pex13p SH3 domain with a peptide of Pex14p

Structural highlights

1n5z is a 4 chain structure with sequence from Atcc 18824. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[PEX13_YEAST] Component of the peroxisomal translocation machinery with PEX14 and PEX17. Interacts with the PTS1 receptor (PAS10/PEX5). [PEX14_YEAST] Component of the peroxisomal translocation machinery with PEX13 and PEX17. Interacts with both the PTS1 and PTS2 receptors. Binds directly to PEX17.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

While the function of most small signaling domains is confined to binary ligand interactions, the peroxisomal Pex13p SH3 domain has the unique capacity of binding to two different ligands, Pex5p and Pex14p. We have used this domain as a model to decipher its structurally independent ligand binding sites. By the combined use of X-ray crystallography, NMR spectroscopy, and circular dichroism, we show that the two ligands bind in unrelated conformations to patches located at opposite surfaces of this SH3 domain. Mutations in the Pex13p SH3 domain that abolish interactions within the Pex13p-Pex5p interface specifically impair PTS1-dependent protein import into yeast peroxisomes.

Topography for independent binding of alpha-helical and PPII-helical ligands to a peroxisomal SH3 domain.,Douangamath A, Filipp FV, Klein AT, Barnett P, Zou P, Voorn-Brouwer T, Vega MC, Mayans OM, Sattler M, Distel B, Wilmanns M Mol Cell. 2002 Nov;10(5):1007-17. PMID:12453410^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Douangamath A, Filipp FV, Klein AT, Barnett P, Zou P, Voorn-Brouwer T, Vega MC, Mayans OM, Sattler M, Distel B, Wilmanns M. Topography for independent binding of alpha-helical and PPII-helical ligands to a peroxisomal SH3 domain. Mol Cell. 2002 Nov;10(5):1007-17. PMID:12453410

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1n5z"

@@ Line 3: / Line 3: @@
 <StructureSection load='1n5z' size='340' side='right'caption='[[1n5z]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1n5z]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N5Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N5Z FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1n5z]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N5Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N5Z FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n5z OCA], [http://pdbe.org/1n5z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1n5z RCSB], [http://www.ebi.ac.uk/pdbsum/1n5z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1n5z ProSAT]</span></td></tr>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n5z OCA], [https://pdbe.org/1n5z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n5z RCSB], [https://www.ebi.ac.uk/pdbsum/1n5z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n5z ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/PEX13_YEAST PEX13_YEAST]] Component of the peroxisomal translocation machinery with PEX14 and PEX17. Interacts with the PTS1 receptor (PAS10/PEX5). [[http://www.uniprot.org/uniprot/PEX14_YEAST PEX14_YEAST]] Component of the peroxisomal translocation machinery with PEX13 and PEX17. Interacts with both the PTS1 and PTS2 receptors. Binds directly to PEX17.
+[[https://www.uniprot.org/uniprot/PEX13_YEAST PEX13_YEAST]] Component of the peroxisomal translocation machinery with PEX14 and PEX17. Interacts with the PTS1 receptor (PAS10/PEX5). [[https://www.uniprot.org/uniprot/PEX14_YEAST PEX14_YEAST]] Component of the peroxisomal translocation machinery with PEX13 and PEX17. Interacts with both the PTS1 and PTS2 receptors. Binds directly to PEX17.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]

1n5z

From Proteopedia

Revision as of 06:58, 25 August 2021

Complex structure of Pex13p SH3 domain with a peptide of Pex14p

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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