|
|
| Line 3: |
Line 3: |
| | <StructureSection load='5kzl' size='340' side='right'caption='[[5kzl]], [[Resolution|resolution]] 1.73Å' scene=''> | | <StructureSection load='5kzl' size='340' side='right'caption='[[5kzl]], [[Resolution|resolution]] 1.73Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5kzl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"leptospira_icteroides"_noguchi_1919 "leptospira icteroides" noguchi 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KZL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KZL FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5kzl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Leptospira_interrogans Leptospira interrogans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KZL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KZL FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.73Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hol, LA733_3616 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=173 "Leptospira icteroides" Noguchi 1919])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Heme_oxygenase_(biliverdin-producing) Heme oxygenase (biliverdin-producing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.14.18 1.14.14.18] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kzl OCA], [https://pdbe.org/5kzl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kzl RCSB], [https://www.ebi.ac.uk/pdbsum/5kzl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kzl ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kzl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kzl OCA], [http://pdbe.org/5kzl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kzl RCSB], [http://www.ebi.ac.uk/pdbsum/5kzl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kzl ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q8EXM2_LEPIN Q8EXM2_LEPIN] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
| Line 25: |
Line 26: |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Leptospira icteroides noguchi 1919]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Catalano-Dupuy, D L]] | + | [[Category: Leptospira interrogans]] |
| - | [[Category: Ceccarelli, E A]] | + | [[Category: Catalano-Dupuy DL]] |
| - | [[Category: Klinke, S]] | + | [[Category: Ceccarelli EA]] |
| - | [[Category: Otero, L H]] | + | [[Category: Klinke S]] |
| - | [[Category: Rivera, M]] | + | [[Category: Otero LH]] |
| - | [[Category: Soldano, A]] | + | [[Category: Rivera M]] |
| - | [[Category: Heme oxygenase leptospira]]
| + | [[Category: Soldano A]] |
| - | [[Category: Oxidoreductase]]
| + | |
| Structural highlights
Function
Q8EXM2_LEPIN
Publication Abstract from PubMed
Heme oxygenase from Leptospira interrogans is an important virulence factor. During catalysis, redox equivalents are provided to this enzyme by the plastidic-type ferredoxin-NADP+ reductase also found in L. interrogans. This process may have evolved to aid this bacterial pathogen to obtain heme-iron from their host and enable successful colonization. Herein we report the crystal structure of the heme oxygenase-heme complex at 1.73 A resolution. The structure reveals several distinctive features related to its function. A hydrogen bonded network of structural water molecules that extends from the catalytic site to the protein surface was cleared observed. A depression on the surface appears to be the H+ network entrance from the aqueous environment to the catalytic site for O2 activation, a key step in the heme oxygenase reaction. We have performed a mutational analysis of the F157, located at the above-mentioned depression. The mutant enzymes were unable to carry out the complete degradation of heme to biliverdin since the reaction was arrested at the verdoheme stage. We also observed that the stability of the oxyferrous complex, the efficiency of heme hydroxylation and the subsequent conversion to verdoheme was adversely affected. These findings underscore a long-range communication between the outer fringes of the hydrogen-bonded network of structural waters and the heme active site during catalysis. Finally, by analyzing the crystal structures of ferredoxin-NADP+ reductase and heme oxygenase, we propose a model for the productive association of these proteins.
Structural and mutational analyses of the Leptospira interrogans virulence-related heme oxygenase provide insights into its catalytic mechanism.,Soldano A, Klinke S, Otero LH, Rivera M, Catalano-Dupuy DL, Ceccarelli EA PLoS One. 2017 Aug 3;12(8):e0182535. doi: 10.1371/journal.pone.0182535., eCollection 2017. PMID:28771589[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Soldano A, Klinke S, Otero LH, Rivera M, Catalano-Dupuy DL, Ceccarelli EA. Structural and mutational analyses of the Leptospira interrogans virulence-related heme oxygenase provide insights into its catalytic mechanism. PLoS One. 2017 Aug 3;12(8):e0182535. doi: 10.1371/journal.pone.0182535., eCollection 2017. PMID:28771589 doi:http://dx.doi.org/10.1371/journal.pone.0182535
|