This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6dyk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:16, 11 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6dyk' size='340' side='right'caption='[[6dyk]], [[Resolution|resolution]] 1.96&Aring;' scene=''>
<StructureSection load='6dyk' size='340' side='right'caption='[[6dyk]], [[Resolution|resolution]] 1.96&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6dyk]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DYK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DYK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6dyk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DYK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DYK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=NO:NITRIC+OXIDE'>NO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.955&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6dyi|6dyi]], [[6dyb|6dyb]], [[6dyc|6dyc]], [[6dye|6dye]], [[6dyd|6dyd]], [[6dyg|6dyg]], [[6dyf|6dyf]], [[6dyh|6dyh]], [[6dy6|6dy6]], [[6dy4|6dy4]], [[6dy8|6dy8]], [[6dyj|6dyj]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=NO:NITRIC+OXIDE'>NO</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cybC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dyk OCA], [https://pdbe.org/6dyk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dyk RCSB], [https://www.ebi.ac.uk/pdbsum/6dyk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dyk ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dyk OCA], [http://pdbe.org/6dyk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dyk RCSB], [http://www.ebi.ac.uk/pdbsum/6dyk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dyk ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/C562_ECOLX C562_ECOLX]] Electron-transport protein of unknown function.
+
[https://www.uniprot.org/uniprot/C562_ECOLX C562_ECOLX] Electron-transport protein of unknown function.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 27: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Rittle, J]]
+
[[Category: Rittle J]]
-
[[Category: Tezcan, F A]]
+
[[Category: Tezcan FA]]
-
[[Category: 4-helix bundle]]
+
-
[[Category: Designed protein]]
+
-
[[Category: Metal binding protein]]
+

Current revision

Iron- and Nitric Oxide-bound structure of the engineered cyt b562 variant, CH3Y*

PDB ID 6dyk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools