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| | <StructureSection load='4jdz' size='340' side='right'caption='[[4jdz]], [[Resolution|resolution]] 2.10Å' scene=''> | | <StructureSection load='4jdz' size='340' side='right'caption='[[4jdz]], [[Resolution|resolution]] 2.10Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4jdz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staah Staah]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JDZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JDZ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4jdz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_TCH60 Staphylococcus aureus subsp. aureus TCH60]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JDZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JDZ FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4je0|4je0]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jdz OCA], [https://pdbe.org/4jdz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jdz RCSB], [https://www.ebi.ac.uk/pdbsum/4jdz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jdz ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sdrD, HMPREF0772_12627 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=548473 STAAH])</td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jdz OCA], [http://pdbe.org/4jdz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jdz RCSB], [http://www.ebi.ac.uk/pdbsum/4jdz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jdz ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Staah]] | + | [[Category: Staphylococcus aureus subsp. aureus TCH60]] |
| - | [[Category: Ge, J]] | + | [[Category: Ge J]] |
| - | [[Category: Wang, X]] | + | [[Category: Wang X]] |
| - | [[Category: Yang, M]] | + | [[Category: Yang M]] |
| - | [[Category: Cell adhesion]]
| + | |
| - | [[Category: Mscramm]]
| + | |
| - | [[Category: Receptor]]
| + | |
| - | [[Category: Staphylococcus aureus]]
| + | |
| - | [[Category: Surface]]
| + | |
| Structural highlights
Publication Abstract from PubMed
Staphylococcus aureus is the most important Gram-positive colonizer of human skin and nasal passage, causing high morbidity and mortality. SD-repeat containing protein D (SdrD), an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules) family surface protein, plays an important role in S. aureus adhesion and pathogenesis, while its binding target and molecular mechanism remain largely unknown. Here we solved the crystal structures of SdrD N2-N3 domain and N2-N3-B1 domain. Through structural analysis and comparisons, we characterized the ligand binding site of SdrD, and proposed a featured sequence motif of its potential ligands. In addition, the structures revealed for the first time the interactions between B1 domain and N2-N3 domain among B domain-containing MSCRAMMs. Our results may help in understanding the roles SdrD plays in S. aureus adhesion and shed light on the development of novel antibiotics.
Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands.,Wang X, Ge J, Liu B, Hu Y, Yang M Protein Cell. 2013 Apr;4(4):277-85. doi: 10.1007/s13238-013-3009-x. Epub 2013 Apr, 3. PMID:23549613[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Wang X, Ge J, Liu B, Hu Y, Yang M. Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands. Protein Cell. 2013 Apr;4(4):277-85. doi: 10.1007/s13238-013-3009-x. Epub 2013 Apr, 3. PMID:23549613 doi:10.1007/s13238-013-3009-x
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