This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5vr6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:56, 4 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5vr6' size='340' side='right'caption='[[5vr6]], [[Resolution|resolution]] 1.87&Aring;' scene=''>
<StructureSection load='5vr6' size='340' side='right'caption='[[5vr6]], [[Resolution|resolution]] 1.87&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5vr6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VR6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VR6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5vr6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VR6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VR6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.87&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">UBASH3B, KIAA1959, STS1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vr6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vr6 OCA], [https://pdbe.org/5vr6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vr6 RCSB], [https://www.ebi.ac.uk/pdbsum/5vr6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vr6 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vr6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vr6 OCA], [http://pdbe.org/5vr6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vr6 RCSB], [http://www.ebi.ac.uk/pdbsum/5vr6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vr6 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/UBS3B_HUMAN UBS3B_HUMAN]] Interferes with CBL-mediated down-regulation and degradation of receptor-type tyrosine kinases. Promotes accumulation of activated target receptors, such as T-cell receptors and EGFR, on the cell surface. Exhibits tyrosine phosphatase activity toward several substrates including EGFR, FAK, SYK, and ZAP70. Down-regulates proteins that are dually modified by both protein tyrosine phosphorylation and ubiquitination.<ref>PMID:15159412</ref> <ref>PMID:17880946</ref>
+
[https://www.uniprot.org/uniprot/UBS3B_HUMAN UBS3B_HUMAN] Interferes with CBL-mediated down-regulation and degradation of receptor-type tyrosine kinases. Promotes accumulation of activated target receptors, such as T-cell receptors and EGFR, on the cell surface. Exhibits tyrosine phosphatase activity toward several substrates including EGFR, FAK, SYK, and ZAP70. Down-regulates proteins that are dually modified by both protein tyrosine phosphorylation and ubiquitination.<ref>PMID:15159412</ref> <ref>PMID:17880946</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 27: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Protein-tyrosine-phosphatase]]
+
[[Category: Carpino N]]
-
[[Category: Carpino, N]]
+
[[Category: French JB]]
-
[[Category: French, J B]]
+
[[Category: Kaur N]]
-
[[Category: Kaur, N]]
+
[[Category: Weinheimer AW]]
-
[[Category: Weinheimer, A W]]
+
[[Category: Yin Y]]
-
[[Category: Yin, Y]]
+
[[Category: Zhou W]]
-
[[Category: Zhou, W]]
+
-
[[Category: Histidine phosphatase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Protein tyrosine phosphatase]]
+
-
[[Category: T-cell receptor]]
+
-
[[Category: Zap-70]]
+

Current revision

Structure of Human Sts-1 histidine phosphatase domain with sulfate bound

PDB ID 5vr6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools