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|   | <StructureSection load='5vks' size='340' side='right'caption='[[5vks]], [[Resolution|resolution]] 1.94Å' scene=''>  |   | <StructureSection load='5vks' size='340' side='right'caption='[[5vks]], [[Resolution|resolution]] 1.94Å' scene=''>  | 
|   | == Structural highlights ==  |   | == Structural highlights ==  | 
| - | <table><tr><td colspan='2'>[[5vks]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_group_a_rotavirus Human group a rotavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VKS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VKS FirstGlance]. <br>  | + | <table><tr><td colspan='2'>[[5vks]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_rotavirus_A Human rotavirus A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VKS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VKS FirstGlance]. <br>  | 
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>  | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.94Å</td></tr>  | 
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5vki|5vki]]</td></tr>
  | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>  | 
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10941 Human group A rotavirus])</td></tr>
  | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vks FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vks OCA], [https://pdbe.org/5vks PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vks RCSB], [https://www.ebi.ac.uk/pdbsum/5vks PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vks ProSAT]</span></td></tr>  | 
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vks FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vks OCA], [http://pdbe.org/5vks PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vks RCSB], [http://www.ebi.ac.uk/pdbsum/5vks PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vks ProSAT]</span></td></tr>  | + |  | 
|   | </table>  |   | </table>  | 
|   | == Function ==  |   | == Function ==  | 
| - | [[http://www.uniprot.org/uniprot/A7YCM0_9REOV A7YCM0_9REOV]] Outer capsid protein VP5*: forms the spike "foot" and "body". Acts as a membrane permeabilization protein that mediates release of viral particles from endosomal compartments into the cytoplasm. In integrin-dependent strains, VP5* targets the integrin heterodimer ITGA2/ITGB1 for cell attachment.[SAAS:SAAS00846030]  VP8* forms the head of the spikes. It is the viral hemagglutinin and an important target of neutralizing antibodies. In sialic acid-dependent strains, VP8* binds to host cell sialic acid, most probably a ganglioside, providing the initial contact.[SAAS:SAAS00846016]   | + | [https://www.uniprot.org/uniprot/A7YCM0_9VIRU A7YCM0_9VIRU]   | 
|   | <div style="background-color:#fffaf0;">  |   | <div style="background-color:#fffaf0;">  | 
|   | == Publication Abstract from PubMed ==  |   | == Publication Abstract from PubMed ==  | 
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|   | </div>  |   | </div>  | 
|   | <div class="pdbe-citations 5vks" style="background-color:#fffaf0;"></div>  |   | <div class="pdbe-citations 5vks" style="background-color:#fffaf0;"></div>  | 
|   | + |  | 
|   | + | ==See Also==  | 
|   | + | *[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]  | 
|   | == References ==  |   | == References ==  | 
|   | <references/>  |   | <references/>  | 
|   | __TOC__  |   | __TOC__  | 
|   | </StructureSection>  |   | </StructureSection>  | 
| - | [[Category: Human group a rotavirus]]  | + | [[Category: Human rotavirus A]]  | 
|   | [[Category: Large Structures]]  |   | [[Category: Large Structures]]  | 
| - | [[Category: Jiang, X]]  | + | [[Category: Jiang X]]  | 
| - | [[Category: Kennedy, M A]]  | + | [[Category: Kennedy MA]]  | 
| - | [[Category: Liu, Y]]  | + | [[Category: Liu Y]]  | 
| - | [[Category: Woodruff, A]]  | + | [[Category: Woodruff A]]  | 
| - | [[Category: Xu, S]]  | + | [[Category: Xu S]]  | 
| - | [[Category: Zhong, W]]  | + | [[Category: Zhong W]]  | 
| - | [[Category: Complex]]
  | + |  | 
| - | [[Category: Lnfpi]]
  | + |  | 
| - | [[Category: Viral protein]]
  | + |  | 
 |   Structural highlights 
5vks is a 2 chain structure with sequence from Human rotavirus A. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.  
 |  | Method: | X-ray diffraction, Resolution 1.94Å |  
| Ligands: | , , , , ,  |  
| Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |  
 
  Function 
A7YCM0_9VIRU 
 
  Publication Abstract from PubMed 
Recognition of specific cell surface glycans, mediated by the VP8* domain of the spike protein VP4, is the essential first step in rotavirus (RV) infection. Due to lack of direct structural information of virus-ligand interactions, the molecular basis of ligand-controlled host ranges of the major human RVs (P[8] and P[4]) in P[II] genogroup remains unknown. Here, through characterization of a minor P[II] RV (P[19]) that can infect both animals (pigs) and humans, we made an important advance to fill this knowledge gap by solving the crystal structures of the P[19] VP8* in complex with its ligands. Our data showed that P[19] RVs use a novel binding site that differs from the known ones of other genotypes/genogroups. This binding site is capable of interacting with two types of glycans, the mucin core and type 1 histo-blood group antigens (HBGAs) with a common GlcNAc as the central binding saccharide. The binding site is apparently shared by other P[II] RVs and possibly two genotypes (P[10] and P[12]) in P[I] as shown by their highly conserved GlcNAc-interacting residues. These data provide strong evidence of evolutionary connections among these human and animal RVs, pointing to a common ancestor in P[I] with a possible animal host origin. While the binding properties to GlcNAc-containing saccharides are maintained, changes in binding to additional residues, such as those in the polymorphic type 1 HBGAs may occur in the course of RV evolution, explaining the complex P[II] genogroup that mainly causes diseases in humans but also in some animals.
 Structural basis of glycan specificity of P[19] VP8*: Implications for rotavirus zoonosis and evolution.,Liu Y, Xu S, Woodruff AL, Xia M, Tan M, Kennedy MA, Jiang X PLoS Pathog. 2017 Nov 14;13(11):e1006707. doi: 10.1371/journal.ppat.1006707., eCollection 2017 Nov. PMID:29136651[1]
 From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. 
 
 
 See Also
  References 
- ↑ Liu Y, Xu S, Woodruff AL, Xia M, Tan M, Kennedy MA, Jiang X. Structural basis of glycan specificity of P[19] VP8*: Implications for rotavirus  zoonosis and evolution. PLoS Pathog. 2017 Nov 14;13(11):e1006707. doi: 10.1371/journal.ppat.1006707., eCollection 2017 Nov. PMID:29136651 doi:http://dx.doi.org/10.1371/journal.ppat.1006707
  
 
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