1rtt

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==Crystal structure determination of a putative NADH-dependent reductase using sulfur anomalous signal==
==Crystal structure determination of a putative NADH-dependent reductase using sulfur anomalous signal==
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<StructureSection load='1rtt' size='340' side='right'caption='[[1rtt]], [[Resolution|resolution]] 1.28&Aring;' scene=''>
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<StructureSection load='1rtt' size='340' side='right'caption='[[1rtt]]' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1rtt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RTT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RTT FirstGlance]. <br>
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RTT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RTT FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rtt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rtt OCA], [https://pdbe.org/1rtt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rtt RCSB], [https://www.ebi.ac.uk/pdbsum/1rtt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rtt ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1rtt TOPSAN]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rtt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rtt OCA], [http://pdbe.org/1rtt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rtt RCSB], [http://www.ebi.ac.uk/pdbsum/1rtt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rtt ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1rtt TOPSAN]</span></td></tr>
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</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rtt ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rtt ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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The availability of high-intensity synchrotron facilities, technological advances in data-collection techniques and improved data-reduction and crystallographic software have ushered in a new era in high-throughput macromolecular crystallography. Here, the de novo automated crystal structure determination at 1.28 A resolution of an NAD(P)H-dependent FMN reductase flavoprotein from Pseudomonas aeruginosa PA01-derived protein Q9I4D4 using the anomalous signal from an unusually small number of S atoms is reported. Although this protein lacks the flavodoxin key fingerprint motif [(T/S)XTGXT], it has been confirmed to bind flavin mononucleotide and the binding site was identified via X-ray crystallography. This protein contains a novel flavin mononucleotide-binding site GSLRSGSYN, which has not been previously reported. Detailed statistics pertaining to sulfur phasing and other factors contributing to structure determination are discussed. Structural comparisons of the apoenzyme and the protein complexed with flavin mononucleotide show conformational changes on cofactor binding. NADPH-dependent activity has been confirmed with biochemical assays.
 
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Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal.,Agarwal R, Bonanno JB, Burley SK, Swaminathan S Acta Crystallogr D Biol Crystallogr. 2006 Apr;62(Pt 4):383-91. Epub 2006, Mar 18. PMID:16552139<ref>PMID:16552139</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 1rtt" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Pseae]]
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[[Category: Agarwal R]]
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[[Category: Agarwal, R]]
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[[Category: Burley SK]]
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[[Category: Burley, S K]]
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[[Category: Swaminathan S]]
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[[Category: Structural genomic]]
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[[Category: Swaminathan, S]]
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[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Putative reductase]]
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[[Category: Sad with sulfur]]
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[[Category: Unknown function]]
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Revision as of 07:21, 22 September 2021

Crystal structure determination of a putative NADH-dependent reductase using sulfur anomalous signal

PDB ID 1rtt

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