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6khr

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Current revision (10:33, 22 November 2023) (edit) (undo)
 
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<StructureSection load='6khr' size='340' side='right'caption='[[6khr]], [[Resolution|resolution]] 2.79&Aring;' scene=''>
<StructureSection load='6khr' size='340' side='right'caption='[[6khr]], [[Resolution|resolution]] 2.79&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6khr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6KHR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6KHR FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6khr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6KHR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6KHR FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6khr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6khr OCA], [http://pdbe.org/6khr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6khr RCSB], [http://www.ebi.ac.uk/pdbsum/6khr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6khr ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.786&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6khr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6khr OCA], [https://pdbe.org/6khr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6khr RCSB], [https://www.ebi.ac.uk/pdbsum/6khr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6khr ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/P95197_MYCTU P95197_MYCTU]] Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate.[SAAS:SAAS01090368]
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[https://www.uniprot.org/uniprot/P95197_MYCTU P95197_MYCTU] Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate.[SAAS:SAAS01090368]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Enzymes from the purine salvage pathway in Mycobacterium tuberculosis (Mtb) have been regarded as an attractive target for the development of anti-bacterial drugs. Although this pathway has not been extensively studied in Mtb, it has been identified as essential for growth and survival. Glycinamide-RNase-transformylase T (PurT) is found only in some specific bacteria including Mtb and utilizes ATP-dependent ligation to catalyze the formylation of 5'-phosphoribosyl-glycinamide (GAR) in the third reaction of the de novo purine salvage pathway. In the study, we determined the crystal structure of MtbPurT at a resolution of 2.79 A. In contrast to Pyrococcus horikoshii OT3 PurT (phBCCPPurT), MtbPurT exhibits an "open" conformation, which results in a broader ATP-binding pocket and thus might facilitate the entry and exit of the cofactor. Additionally, active site superposition with E.coli PurT (EcPurT) showed that residues involved in the ATP-binding site in MtbPurT exhibited structural similarity but had notable difference in the GAR-binding site. The loop 383-389 in MtbPurT was much shorter and shifted 5.7 A away from the phosphate of the GAR substrate. The different GAR-binding mode might result in a large conformational change in MtbPurT, and would provide a possible opportunity for anti-TB drug development.
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Structural characterization of glycinamide-RNase-transformylase T from Mycobacterium tuberculosis.,Chen C, Liu Z, Liu L, Wang J, Jin Q Emerg Microbes Infect. 2020 Jan 2;9(1):58-66. doi: 10.1080/22221751.2019.1707716. , eCollection 2020. PMID:31894729<ref>PMID:31894729</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6khr" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Chen, C]]
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[[Category: Mycobacterium tuberculosis H37Rv]]
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[[Category: Wang, J]]
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[[Category: Chen C]]
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[[Category: Purine salvag pathway]]
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[[Category: Wang J]]
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[[Category: Transferase]]
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Current revision

Structure of glycinamide-RNase-transformylase T from Mycobacterium tuberculosis

PDB ID 6khr

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