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| <StructureSection load='6n3k' size='340' side='right'caption='[[6n3k]], [[Resolution|resolution]] 2.20Å' scene=''> | | <StructureSection load='6n3k' size='340' side='right'caption='[[6n3k]], [[Resolution|resolution]] 2.20Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6n3k]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei_qm9414 Trichoderma reesei qm9414]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N3K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6N3K FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6n3k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichoderma_reesei_QM9414 Trichoderma reesei QM9414]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6N3K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6N3K FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K9V:N-{cis-4-[(2,6-difluorophenyl)methoxy]cyclohexyl}-N-(3-phenylpropyl)urea'>K9V</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TrEH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=334564 Trichoderma reesei QM9414])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K9V:N-{cis-4-[(2,6-difluorophenyl)methoxy]cyclohexyl}-N-(3-phenylpropyl)urea'>K9V</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6n3k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n3k OCA], [http://pdbe.org/6n3k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6n3k RCSB], [http://www.ebi.ac.uk/pdbsum/6n3k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6n3k ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6n3k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6n3k OCA], [https://pdbe.org/6n3k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6n3k RCSB], [https://www.ebi.ac.uk/pdbsum/6n3k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6n3k ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/G0R7E2_HYPJQ G0R7E2_HYPJQ] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </div> | | </div> |
| <div class="pdbe-citations 6n3k" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6n3k" style="background-color:#fffaf0;"></div> |
| + | |
| + | ==See Also== |
| + | *[[Epoxide hydrolase 3D structures|Epoxide hydrolase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Trichoderma reesei qm9414]] | + | [[Category: Trichoderma reesei QM9414]] |
- | [[Category: Adriani, P P]] | + | [[Category: Adriani PP]] |
- | [[Category: Chambergo, F S]] | + | [[Category: Chambergo FS]] |
- | [[Category: Dias, M V]] | + | [[Category: Dias MV]] |
- | [[Category: Hammock, B D]] | + | [[Category: Hammock BD]] |
- | [[Category: Morisseau, C]] | + | [[Category: Morisseau C]] |
- | [[Category: Oliveira, G S.de]]
| + | [[Category: Ribeiro JA]] |
- | [[Category: Ribeiro, J A]] | + | [[Category: De Oliveira GS]] |
- | [[Category: Epoxide hydrolase]] | + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Inhibitor]]
| + | |
- | [[Category: Trichoderma reesei]]
| + | |
| Structural highlights
Function
G0R7E2_HYPJQ
Publication Abstract from PubMed
Epoxide hydrolases (EHs) are enzymes involved in the metabolism of endogenous and exogenous epoxides, and the development of EH inhibitors has important applications in the medicine. In humans, EH inhibitors are being tested in the treatment of cardiovascular diseases and show potent anti-inflammatory effects. EH inhibitors are also considerate promising molecules against infectious diseases. EHs are functionally very well studied, but only a few members have its three-dimensional structures characterized. Recently, a new EH from the filamentous fungi Trichoderma reseei (TrEH) was reported, and a series of urea or amide-based inhibitors were identified. In this study, we describe the crystallographic structures of TrEH in complex with five different urea or amide-based inhibitors with resolutions ranging from 2.6 to 1.7A. The analysis of these structures reveals the molecular basis of the inhibition of these compounds. We could also observe that these inhibitors occupy the whole extension of the active site groove and only a few conformational changes are involved. Understanding the structural basis EH interactions with different inhibitors might substantially contribute for the study of fungal metabolism and in the development of novel and more efficient antifungal drugs against pathogenic Trichoderma species.
The molecular structure of an epoxide hydrolase from Trichoderma reesei in complex with urea or amide-based inhibitors.,de Oliveira GS, Adriani PP, Ribeiro JA, Morisseau C, Hammock BD, Dias MVB, Chambergo FS Int J Biol Macromol. 2019 May 15;129:653-658. doi:, 10.1016/j.ijbiomac.2019.02.070. Epub 2019 Feb 13. PMID:30771398[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ de Oliveira GS, Adriani PP, Ribeiro JA, Morisseau C, Hammock BD, Dias MVB, Chambergo FS. The molecular structure of an epoxide hydrolase from Trichoderma reesei in complex with urea or amide-based inhibitors. Int J Biol Macromol. 2019 May 15;129:653-658. doi:, 10.1016/j.ijbiomac.2019.02.070. Epub 2019 Feb 13. PMID:30771398 doi:http://dx.doi.org/10.1016/j.ijbiomac.2019.02.070
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