This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6nhu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:54, 11 October 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6nhu' size='340' side='right'caption='[[6nhu]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='6nhu' size='340' side='right'caption='[[6nhu]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6nhu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrfc Agrfc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NHU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NHU FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6nhu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NHU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NHU FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Atu0933 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nhu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nhu OCA], [https://pdbe.org/6nhu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nhu RCSB], [https://www.ebi.ac.uk/pdbsum/6nhu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nhu ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nhu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nhu OCA], [http://pdbe.org/6nhu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nhu RCSB], [http://www.ebi.ac.uk/pdbsum/6nhu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nhu ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q7D0B8_AGRFC Q7D0B8_AGRFC]
==See Also==
==See Also==
Line 14: Line 15:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Agrfc]]
+
[[Category: Agrobacterium fabrum str. C58]]
-
[[Category: Beta-lactamase]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Babnigg, G]]
+
[[Category: Babnigg G]]
-
[[Category: Structural genomic]]
+
[[Category: Endres M]]
-
[[Category: Endres, M]]
+
[[Category: Joachimiak A]]
-
[[Category: Joachimiak, A]]
+
[[Category: Kim Y]]
-
[[Category: Kim, Y]]
+
[[Category: Welk L]]
-
[[Category: Welk, L]]
+
-
[[Category: Beta lactamase class d]]
+
-
[[Category: Csgid]]
+
-
[[Category: Hydrolase]]
+

Current revision

Crystal Structure of the Beta Lactamase Class D YbxI from Agrobacterium fabrum

PDB ID 6nhu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools