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| <StructureSection load='6s5z' size='340' side='right'caption='[[6s5z]], [[Resolution|resolution]] 1.80Å' scene=''> | | <StructureSection load='6s5z' size='340' side='right'caption='[[6s5z]], [[Resolution|resolution]] 1.80Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6s5z]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_scarlatinae"_klein_1884 "micrococcus scarlatinae" klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S5Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6S5Z FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6s5z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes Streptococcus pyogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S5Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6S5Z FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">spr28 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1314 "Micrococcus scarlatinae" Klein 1884])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6s5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s5z OCA], [https://pdbe.org/6s5z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6s5z RCSB], [https://www.ebi.ac.uk/pdbsum/6s5z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6s5z ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6s5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s5z OCA], [http://pdbe.org/6s5z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s5z RCSB], [http://www.ebi.ac.uk/pdbsum/6s5z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s5z ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q9XDB6_STRPY Q9XDB6_STRPY] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Micrococcus scarlatinae klein 1884]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Bateman, A]] | + | [[Category: Streptococcus pyogenes]] |
- | [[Category: Griffiths, S C]] | + | [[Category: Bateman A]] |
- | [[Category: Potts, J R]] | + | [[Category: Griffiths SC]] |
- | [[Category: Whelan, F]] | + | [[Category: Potts JR]] |
- | [[Category: Whittingham, J L]] | + | [[Category: Whelan F]] |
- | [[Category: Bacterial cell surface]]
| + | [[Category: Whittingham JL]] |
- | [[Category: Domain atrophy]]
| + | |
- | [[Category: Immunoglobulin fold]]
| + | |
- | [[Category: Profile-hmm]]
| + | |
- | [[Category: Rib domain]]
| + | |
- | [[Category: Structural protein]]
| + | |
| Structural highlights
Function
Q9XDB6_STRPY
Publication Abstract from PubMed
Streptococcus groups A and B cause serious infections, including early onset sepsis and meningitis in newborns. Rib domain-containing surface proteins are found associated with invasive strains and elicit protective immunity in animal models. Yet, despite their apparent importance in infection, the structure of the Rib domain was previously unknown. Structures of single Rib domains of differing length reveal a rare case of domain atrophy through deletion of 2 core antiparallel strands, resulting in the loss of an entire sheet of the beta-sandwich from an immunoglobulin-like fold. Previously, observed variation in the number of Rib domains within these bacterial cell wall-attached proteins has been suggested as a mechanism of immune evasion. Here, the structure of tandem domains, combined with molecular dynamics simulations and small angle X-ray scattering, suggests that variability in Rib domain number would result in differential projection of an N-terminal host-colonization domain from the bacterial surface. The identification of 2 further structures where the typical B-D-E immunoglobulin beta-sheet is replaced with an alpha-helix further confirms the extensive structural malleability of the Rib domain.
Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection.,Whelan F, Lafita A, Griffiths SC, Cooper REM, Whittingham JL, Turkenburg JP, Manfield IW, St John AN, Paci E, Bateman A, Potts JR Proc Natl Acad Sci U S A. 2019 Dec 9. pii: 1911776116. doi:, 10.1073/pnas.1911776116. PMID:31818940[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Whelan F, Lafita A, Griffiths SC, Cooper REM, Whittingham JL, Turkenburg JP, Manfield IW, St John AN, Paci E, Bateman A, Potts JR. Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection. Proc Natl Acad Sci U S A. 2019 Dec 9. pii: 1911776116. doi:, 10.1073/pnas.1911776116. PMID:31818940 doi:http://dx.doi.org/10.1073/pnas.1911776116
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