This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4xed

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (21:25, 12 April 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='4xed' size='340' side='right'caption='[[4xed]], [[Resolution|resolution]] 1.23&Aring;' scene=''>
<StructureSection load='4xed' size='340' side='right'caption='[[4xed]], [[Resolution|resolution]] 1.23&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4xed]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermoplasmatales_archaeon_f03 Thermoplasmatales archaeon f03]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XED OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4XED FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4xed]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasmatales_archaeon_SCGC_AB-540-F20 Thermoplasmatales archaeon SCGC AB-540-F20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4XED OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4XED FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4xed FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xed OCA], [https://pdbe.org/4xed PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4xed RCSB], [https://www.ebi.ac.uk/pdbsum/4xed PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4xed ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MBGDF03_00742 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1242866 Thermoplasmatales archaeon F03])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4xed FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4xed OCA], [http://pdbe.org/4xed PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4xed RCSB], [http://www.ebi.ac.uk/pdbsum/4xed PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4xed ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/M7U057_9ARCH M7U057_9ARCH]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Thermoplasmatales archaeon f03]]
+
[[Category: Thermoplasmatales archaeon SCGC AB-540-F20]]
-
[[Category: Endres, M]]
+
[[Category: Endres M]]
-
[[Category: Joachimiak, A]]
+
[[Category: Joachimiak A]]
-
[[Category: Joachimiak, G]]
+
[[Category: Joachimiak G]]
-
[[Category: Structural genomic]]
+
[[Category: Michalska K]]
-
[[Category: Michalska, K]]
+
-
[[Category: Marine sediment]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Protein binding]]
+
-
[[Category: Psi-biology]]
+
-
[[Category: Single cell genomic]]
+

Current revision

PKD domain of M14-like peptidase from Thermoplasmatales archaeon SCGC AB-540-F20

PDB ID 4xed

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools