This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5kgj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:00, 27 September 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5kgj' size='340' side='right'caption='[[5kgj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='5kgj' size='340' side='right'caption='[[5kgj]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5kgj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cloab Cloab]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KGJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KGJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5kgj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KGJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KGJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACO:ACETYL+COENZYME+*A'>ACO</scene>, <scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EP1:3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC+ACID'>EP1</scene>, <scene name='pdbligand=X6X:2-AMINO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE'>X6X</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5kf1|5kf1]], [[5kf2|5kf2]], [[5kf8|5kf8]], [[5kf9|5kf9]], [[5kga|5kga]], [[5kgh|5kgh]], [[5kgp|5kgp]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACO:ACETYL+COENZYME+*A'>ACO</scene>, <scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EP1:3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC+ACID'>EP1</scene>, <scene name='pdbligand=X6X:2-AMINO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE'>X6X</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CA_C0184 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 CLOAB])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kgj OCA], [https://pdbe.org/5kgj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kgj RCSB], [https://www.ebi.ac.uk/pdbsum/5kgj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kgj ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kgj OCA], [http://pdbe.org/5kgj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kgj RCSB], [http://www.ebi.ac.uk/pdbsum/5kgj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kgj ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q97ML2_CLOAB Q97ML2_CLOAB]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cloab]]
+
[[Category: Clostridium acetobutylicum ATCC 824]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Dopkins, B J]]
+
[[Category: Dopkins BJ]]
-
[[Category: Holden, H M]]
+
[[Category: Holden HM]]
-
[[Category: Thoden, J B]]
+
[[Category: Thoden JB]]
-
[[Category: Tipton, P A]]
+
[[Category: Tipton PA]]
-
[[Category: Acyltransferase]]
+
-
[[Category: Gnat]]
+
-
[[Category: N-acetyltransferase]]
+
-
[[Category: Tandem-gnat]]
+
-
[[Category: Transferase]]
+

Current revision

X-ray structure of a glucosamine N-Acetyltransferase from Clostridium acetobutylicum in complex with galactosamine

PDB ID 5kgj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools