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| | <StructureSection load='6jif' size='340' side='right'caption='[[6jif]], [[Resolution|resolution]] 1.70Å' scene=''> | | <StructureSection load='6jif' size='340' side='right'caption='[[6jif]], [[Resolution|resolution]] 1.70Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6jif]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JIF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JIF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6jif]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._UW4 Pseudomonas sp. UW4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JIF FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Branched-chain-amino-acid_transaminase Branched-chain-amino-acid transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.42 2.6.1.42] </span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jif OCA], [http://pdbe.org/6jif PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jif RCSB], [http://www.ebi.ac.uk/pdbsum/6jif PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jif ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jif OCA], [https://pdbe.org/6jif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jif RCSB], [https://www.ebi.ac.uk/pdbsum/6jif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jif ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/K9NJ94_9PSED K9NJ94_9PSED] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </div> | | </div> |
| | <div class="pdbe-citations 6jif" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6jif" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Aminotransferase 3D structures|Aminotransferase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Branched-chain-amino-acid transaminase]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Guo, L]] | + | [[Category: Pseudomonas sp. UW4]] |
| - | [[Category: Li, D F]] | + | [[Category: Guo L]] |
| - | [[Category: Wu, B]] | + | [[Category: Li DF]] |
| - | [[Category: Zheng, X]] | + | [[Category: Wu B]] |
| - | [[Category: Branched chain amino acid biosynthetic process]]
| + | [[Category: Zheng X]] |
| - | [[Category: Transferase]]
| + | |
| Structural highlights
Function
K9NJ94_9PSED
Publication Abstract from PubMed
Aminotransferases (ATs) are important biocatalysts for the synthesis of chiral amines because of their capability of introducing amino group into ketones or keto acids as well as their high enantioselectivity, high regioselectivity. Among all ATs, branched-chain amino acid aminotransferase (BCAT) can use branched-chain amino acids (BCAAs) as substrate, including L-valine, L-leucine, and L-isoleucine, with alpha-ketoglutarate to form the corresponding alpha-keto acids and L-glutamate. Alternatively, BCATs have been used for the biosynthesis of unnatural amino acids, such as L-tert-leucine and L-norvaline. In the present study, the BCAT from Pseudomonas sp. (PsBCAT) was cloned and expressed in Escherichia coli for biochemical and structural analyses. The optimal reaction temperature and pH of PsBCAT were 40 degrees C and 8.5, respectively. PsBCAT exhibited a comparatively broader substrate spectrum and showed remarkably high activity with bulked aliphatic L-amino acids (kcat up to 220 s(-1)). Additionally, PsBCAT had activities with aromatic L-amino acids, L-histidine, L-lysine, and L-threonine. This substrate promiscuity is unique for the BCAT family and could prove useful in industrial applications. To analyze the catalytic mechanism of PsBCAT with the broad substrate spectrum, the crystal structure of PsBCAT was also determined. Based on the determined crystal structure, we found some differences in the organization of the substrate binding cavity, which may influence the substrate specificity of the enzyme. Finally, conjugated with the ornithine aminotransferase (OrnAT) to shift the reaction equilibrium towards the product formation, the coupled system was applied to the asymmetric synthesis of L-tert-leucine and L-norvaline. In summary, the structural and functional characteristics of PsBCAT were analyzed in detail, and this information will be conducive to industrial production of enantiopure chiral amino acids by aminotransferase.
Biochemical and structural characterization of a highly active branched-chain amino acid aminotransferase from Pseudomonas sp. for efficient biosynthesis of chiral amino acids.,Zheng X, Cui Y, Li T, Li R, Guo L, Li D, Wu B Appl Microbiol Biotechnol. 2019 Oct;103(19):8051-8062. doi:, 10.1007/s00253-019-10105-9. Epub 2019 Sep 4. PMID:31485690[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Zheng X, Cui Y, Li T, Li R, Guo L, Li D, Wu B. Biochemical and structural characterization of a highly active branched-chain amino acid aminotransferase from Pseudomonas sp. for efficient biosynthesis of chiral amino acids. Appl Microbiol Biotechnol. 2019 Oct;103(19):8051-8062. doi:, 10.1007/s00253-019-10105-9. Epub 2019 Sep 4. PMID:31485690 doi:http://dx.doi.org/10.1007/s00253-019-10105-9
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