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5um6

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Current revision (13:29, 4 October 2023) (edit) (undo)
 
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<StructureSection load='5um6' size='340' side='right'caption='[[5um6]], [[Resolution|resolution]] 2.79&Aring;' scene=''>
<StructureSection load='5um6' size='340' side='right'caption='[[5um6]], [[Resolution|resolution]] 2.79&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5um6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Fission_yeast Fission yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UM6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5UM6 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5um6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe_972h- Schizosaccharomyces pombe 972h-]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UM6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5UM6 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8E7:2-(decylamino)ethane-1-thiol'>8E7</scene>, <scene name='pdbligand=8EA:N-(2-{[(4-chlorophenyl)methyl]disulfanyl}ethyl)decan-1-amine'>8EA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.794&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ptr3, SPBC1604.21c, SPBC211.09 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=284812 Fission yeast])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8E7:2-(decylamino)ethane-1-thiol'>8E7</scene>, <scene name='pdbligand=8EA:N-(2-{[(4-chlorophenyl)methyl]disulfanyl}ethyl)decan-1-amine'>8EA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/E1_ubiquitin-activating_enzyme E1 ubiquitin-activating enzyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.2.1.45 6.2.1.45] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5um6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5um6 OCA], [https://pdbe.org/5um6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5um6 RCSB], [https://www.ebi.ac.uk/pdbsum/5um6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5um6 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5um6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5um6 OCA], [http://pdbe.org/5um6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5um6 RCSB], [http://www.ebi.ac.uk/pdbsum/5um6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5um6 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/UBA1_SCHPO UBA1_SCHPO]] Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thioester and free AMP.
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[https://www.uniprot.org/uniprot/UBA1_SCHPO UBA1_SCHPO] Activates ubiquitin by first adenylating its C-terminal glycine residue with ATP, and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thioester and free AMP.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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==See Also==
==See Also==
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*[[Ubiquitin activating enzyme|Ubiquitin activating enzyme]]
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*[[3D structures of Ubiquitin activating enzyme|3D structures of Ubiquitin activating enzyme]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: E1 ubiquitin-activating enzyme]]
 
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[[Category: Fission yeast]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Aldana-Masangkay, G]]
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[[Category: Schizosaccharomyces pombe 972h-]]
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[[Category: Atkison, J H]]
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[[Category: Aldana-Masangkay G]]
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[[Category: Chen, Y]]
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[[Category: Atkison JH]]
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[[Category: Lv, Z]]
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[[Category: Chen Y]]
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[[Category: Olsen, S K]]
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[[Category: Lv Z]]
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[[Category: Yuan, L]]
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[[Category: Olsen SK]]
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[[Category: Atp binding]]
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[[Category: Yuan L]]
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[[Category: Atp/mg binding]]
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[[Category: Ligase]]
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[[Category: Ligase activity]]
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[[Category: Ligase-ligase inhibitor complex]]
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[[Category: Rossmann-like fold]]
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[[Category: Transferase]]
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[[Category: Ubiquitin activating enzyme]]
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[[Category: Ubiquitin e2 binding]]
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[[Category: Ubiquitin-like fold]]
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Current revision

Crystal Structure of S. pombe Uba1 in a closed conformation

PDB ID 5um6

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