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| <StructureSection load='6mkq' size='340' side='right'caption='[[6mkq]], [[Resolution|resolution]] 1.90Å' scene=''> | | <StructureSection load='6mkq' size='340' side='right'caption='[[6mkq]], [[Resolution|resolution]] 1.90Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6mkq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillo_virgola_del_koch"_trevisan_1884 "bacillo virgola del koch" trevisan 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6MKQ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6mkq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MKQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6MKQ FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NXL:(2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2-CARBOXAMIDE'>NXL</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NXL:(2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2-CARBOXAMIDE'>NXL</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6mkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mkq OCA], [http://pdbe.org/6mkq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6mkq RCSB], [http://www.ebi.ac.uk/pdbsum/6mkq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6mkq ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6mkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mkq OCA], [https://pdbe.org/6mkq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6mkq RCSB], [https://www.ebi.ac.uk/pdbsum/6mkq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6mkq ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/A0A0U3IB62_VIBCL A0A0U3IB62_VIBCL] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bacillo virgola del koch trevisan 1884]] | |
- | [[Category: Beta-lactamase]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Mark, B L]] | |
- | [[Category: Vadlamani, G]] | |
- | [[Category: Avibactam]] | |
- | [[Category: Carbapenemase]] | |
- | [[Category: Hydrolase]] | |
- | [[Category: Hydrolase-hydrolase inhibitor complex]] | |
- | [[Category: Vcc-1]] | |
| [[Category: Vibrio cholerae]] | | [[Category: Vibrio cholerae]] |
| + | [[Category: Mark BL]] |
| + | [[Category: Vadlamani G]] |
| Structural highlights
Function
A0A0U3IB62_VIBCL
Publication Abstract from PubMed
In 2016 we identified a new class A carbapenemase, VCC-1, in nontoxigenic Vibrio cholerae that had been isolated from retail shrimp imported into Canada for human consumption. Shortly thereafter, seven additional VCC-1 producing V. cholerae were isolated along the German coastline. These isolates appear to have acquired the VCC-1 gene (bla VCC-1) independently from the Canadian isolate, suggesting bla VCC-1 is mobile and widely distributed. VCC-1 hydrolyzes penicillins, cephalothin, aztreonam, and carbapenems, and like the broadly disseminated class A carbapenemase KPC-2, is only weakly inhibited by clavulanic acid or tazobactam. Although VCC-1 has yet to observed in the clinic, its encroachment into aquaculture and other areas with human activity suggests the enzyme may be emerging as a public health threat. To pre-emptively address this threat, we examined the structural and functional biology of VCC-1 against the FDA approved non-beta-lactam-based inhibitor avibactam. We found that avibactam restored the in vitro sensitivity of V. cholerae to meropenem, impenem and ertapenem. Acylation efficiency was lower for VCC-1 as compared to KPC-2 and akin to that of Pseudomonas aeruginosa PAO1 AmpC (k2/Ki=3.0 x 10(3) M(-1)sec(-137)). The tertiary structure of VCC-1 is similar to that of KPC-2 and they bind avibactam similarly; however, our analyses suggest that VCC-1 may be unable to degrade avibactam as has been found for KPC-2. Based on our prior genomics-based surveillance, we were able to target VCC-1 for detailed molecular studies to gain early insights that could be used to combat this carbapenemse in the future.
Molecular basis for the potent inhibition of the emerging carbapenemase VCC-1 by avibactam.,Mangat CS, Vadlamani G, Holicek V, Chu M, Larmour V, Vocadlo DJ, Mulvey MR, Mark BL Antimicrob Agents Chemother. 2019 Feb 19. pii: AAC.02112-18. doi:, 10.1128/AAC.02112-18. PMID:30782990[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Mangat CS, Vadlamani G, Holicek V, Chu M, Larmour V, Vocadlo DJ, Mulvey MR, Mark BL. Molecular basis for the potent inhibition of the emerging carbapenemase VCC-1 by avibactam. Antimicrob Agents Chemother. 2019 Feb 19. pii: AAC.02112-18. doi:, 10.1128/AAC.02112-18. PMID:30782990 doi:http://dx.doi.org/10.1128/AAC.02112-18
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