6v0k
From Proteopedia
(Difference between revisions)
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<StructureSection load='6v0k' size='340' side='right'caption='[[6v0k]], [[Resolution|resolution]] 2.41Å' scene=''> | <StructureSection load='6v0k' size='340' side='right'caption='[[6v0k]], [[Resolution|resolution]] 2.41Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[6v0k]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6V0K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6V0K FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6v0k]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_10513 Atcc 10513]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6V0K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6V0K FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PvCPS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198730 ATCC 10513])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6v0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6v0k OCA], [http://pdbe.org/6v0k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6v0k RCSB], [http://www.ebi.ac.uk/pdbsum/6v0k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6v0k ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6v0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6v0k OCA], [http://pdbe.org/6v0k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6v0k RCSB], [http://www.ebi.ac.uk/pdbsum/6v0k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6v0k ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The unusual diterpene (C20) synthase copalyl diphosphate synthase from Penicillium verruculosum (PvCPS) is the first bifunctional terpene synthase identified with both prenyltransferase and class II cyclase activities in a single polypeptide chain with alphabetagamma domain architecture. The C-terminal prenyltransferase alphadomain generates geranylgeranyl diphosphate which is then cyclized to form copalyl diphosphate at the N-terminal betagamma domain interface. We now demonstrate that PvCPS exists as a hexamer at high concentrations - a unique quaternary structure for known alphabetagamma terpene synthases. Hexamer assembly is corroborated by a 2.41 A-resolution crystal structure of the alpha domain prenyltransferase obtained from limited proteolysis of full-length PvCPS, as well as the ab initio modeling of full-length PvCPS derived from small-angle X-ray scattering data. Hexamerization of the prenyltransferase alphadomain appears to drive the hexamerization of full-length PvCPS. The PvCPS hexamer dissociates into lower-order species at lower concentrations, as evidenced by size-exclusion chromatography in-line with multiangle light scattering, sedimentation velocity analytical ultracentrifugation, and native polyacrylamide gel electrophoresis experiments, suggesting that oligomerization is concentration dependent. Even so, PvCPS oligomer assembly does not affect prenyltransferase activity in vitro. | ||
+ | |||
+ | Higher-Order Oligomerization of a Chimeric alphabetagamma Bifunctional Diterpene Synthase with Prenyltransferase and Class II Cyclase Activities is Concentration-Dependent.,Ronnebaum TA, Gupta K, Christianson DW J Struct Biol. 2020 Jan 21:107463. doi: 10.1016/j.jsb.2020.107463. PMID:31978464<ref>PMID:31978464</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6v0k" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Atcc 10513]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Christianson, D W]] | [[Category: Christianson, D W]] |
Revision as of 09:10, 5 February 2020
Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain
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