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| | <StructureSection load='4yox' size='340' side='right'caption='[[4yox]], [[Resolution|resolution]] 2.05Å' scene=''> | | <StructureSection load='4yox' size='340' side='right'caption='[[4yox]], [[Resolution|resolution]] 2.05Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4yox]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YOX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YOX FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4yox]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii] and [https://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YOX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YOX FirstGlance]. <br> |
| - | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4yor|4yor]], [[4yot|4yot]], [[4you|4you]], [[4yov|4yov]], [[4yow|4yow]], [[4yoy|4yoy]]</td></tr> | + | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yox OCA], [https://pdbe.org/4yox PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yox RCSB], [https://www.ebi.ac.uk/pdbsum/4yox PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yox ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yox OCA], [http://pdbe.org/4yox PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yox RCSB], [http://www.ebi.ac.uk/pdbsum/4yox PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yox ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/A0A060P168_PYRHR A0A060P168_PYRHR] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Pyrococcus shinkaii]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Ito, T]] | + | [[Category: Pyrococcus horikoshii]] |
| - | [[Category: Miyazono, K]] | + | [[Category: Unidentified]] |
| - | [[Category: Tanokura, M]] | + | [[Category: Ito T]] |
| - | [[Category: Exonuclease]] | + | [[Category: Miyazono K]] |
| - | [[Category: Hydrolase-dna complex]] | + | [[Category: Tanokura M]] |
| Structural highlights
Function
A0A060P168_PYRHR
Publication Abstract from PubMed
Nucleases play important roles in nucleic acid processes, such as replication, repair and recombination. Recently, we identified a novel single-strand specific 3'-5' exonuclease, PfuExo I, from the hyperthermophilic archaeon Pyrococcus furiosus, which may be involved in the Thermococcales-specific DNA repair system. PfuExo I forms a trimer and cleaves single-stranded DNA at every two nucleotides. Here, we report the structural basis for the cleavage mechanism of this novel exonuclease family. A structural analysis of PhoExo I, the homologous enzyme from P. horikoshii OT3, showed that PhoExo I utilizes an RNase H-like active site and possesses a 3'-OH recognition site approximately 9 A away from the active site, which enables cleavage at every two nucleotides. Analyses of the heterotrimeric and monomeric PhoExo I activities showed that trimerization is indispensable for its processive cleavage mechanism, but only one active site of the trimer is required.
Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I.,Miyazono KI, Ishino S, Tsutsumi K, Ito T, Ishino Y, Tanokura M Nucleic Acids Res. 2015 Jul 2. pii: gkv654. PMID:26138487[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Miyazono KI, Ishino S, Tsutsumi K, Ito T, Ishino Y, Tanokura M. Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I. Nucleic Acids Res. 2015 Jul 2. pii: gkv654. PMID:26138487 doi:http://dx.doi.org/10.1093/nar/gkv654
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