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5fb3

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<StructureSection load='5fb3' size='340' side='right'caption='[[5fb3]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
<StructureSection load='5fb3' size='340' side='right'caption='[[5fb3]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5fb3]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrcj Pyrcj]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FB3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FB3 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5fb3]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_calidifontis_JCM_11548 Pyrobaculum calidifontis JCM 11548]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FB3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FB3 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=PPV:PYROPHOSPHATE'>PPV</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">egsA, Pcal_0566 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=410359 PYRCJ])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=PPV:PYROPHOSPHATE'>PPV</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/sn-glycerol-1-phosphate_dehydrogenase sn-glycerol-1-phosphate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.261 1.1.1.261] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fb3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fb3 OCA], [https://pdbe.org/5fb3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fb3 RCSB], [https://www.ebi.ac.uk/pdbsum/5fb3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fb3 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fb3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fb3 OCA], [http://pdbe.org/5fb3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fb3 RCSB], [http://www.ebi.ac.uk/pdbsum/5fb3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fb3 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/G1PDH_PYRCJ G1PDH_PYRCJ]] Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1-phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea.
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[https://www.uniprot.org/uniprot/G1PDH_PYRCJ G1PDH_PYRCJ] Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1-phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Pyrcj]]
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[[Category: Pyrobaculum calidifontis JCM 11548]]
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[[Category: Sn-glycerol-1-phosphate dehydrogenase]]
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[[Category: Hayashi J]]
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[[Category: Hayashi, J]]
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[[Category: Ohshima T]]
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[[Category: Ohshima, T]]
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[[Category: Sakuraba H]]
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[[Category: Sakuraba, H]]
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[[Category: Yamamoto K]]
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[[Category: Yamamoto, K]]
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[[Category: Yoneda K]]
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[[Category: Yoneda, K]]
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[[Category: Oxidoreductase]]
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[[Category: Rossmann fold]]
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Revision as of 06:44, 19 July 2023

Structure of glycerophosphate dehydrogenase in complex with NADPH

PDB ID 5fb3

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